Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   CR922_RS08380 Genome accession   NZ_CP025400
Coordinates   1580373..1581311 (-) Length   312 a.a.
NCBI ID   WP_011226817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EPS     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575373..1586311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR922_RS08360 - 1576912..1577775 (-) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -
  CR922_RS08365 dusB 1577978..1578955 (-) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  CR922_RS08370 hslO 1578948..1579814 (-) 867 WP_041826953.1 Hsp33 family molecular chaperone HslO -
  CR922_RS08375 - 1579895..1580149 (-) 255 WP_011226818.1 hypothetical protein -
  CR922_RS08380 amiF 1580373..1581311 (-) 939 WP_011226817.1 ABC transporter ATP-binding protein Regulator
  CR922_RS08385 - 1581313..1582355 (-) 1043 Protein_1568 ABC transporter ATP-binding protein -
  CR922_RS08390 - 1582369..1583402 (-) 1034 Protein_1569 ABC transporter permease -
  CR922_RS08395 - 1583413..1583631 (-) 219 Protein_1570 ABC transporter permease subunit -
  CR922_RS08400 - 1583633..1584646 (-) 1014 Protein_1571 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35298.86 Da        Isoelectric Point: 6.0546

>NTDB_id=261006 CR922_RS08380 WP_011226817.1 1580373..1581311(-) (amiF) [Streptococcus thermophilus strain EPS]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=261006 CR922_RS08380 WP_011226817.1 1580373..1581311(-) (amiF) [Streptococcus thermophilus strain EPS]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.443

97.756

0.522
  amiF Streptococcus thermophilus LMG 18311

53.115

97.756

0.519
  amiF Streptococcus salivarius strain HSISS4

52.787

97.756

0.516

Multiple sequence alignment