Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   CR921_RS01040 Genome accession   NZ_CP025399
Coordinates   181287..182225 (+) Length   312 a.a.
NCBI ID   WP_101415518.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain GABA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 176287..187225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS10655 - 177951..178157 (+) 207 WP_011225370.1 hypothetical protein -
  CR921_RS01020 - 178242..178986 (+) 745 Protein_151 peptide ABC transporter substrate-binding protein -
  CR921_RS01025 - 178967..179185 (+) 219 Protein_152 ABC transporter permease subunit -
  CR921_RS01030 - 179196..180229 (+) 1034 Protein_153 ABC transporter permease -
  CR921_RS01035 - 180243..181285 (+) 1043 Protein_154 ABC transporter ATP-binding protein -
  CR921_RS01040 amiF 181287..182225 (+) 939 WP_101415518.1 ABC transporter ATP-binding protein Regulator
  CR921_RS10155 - 182447..182635 (+) 189 WP_011225379.1 hypothetical protein -
  CR921_RS01050 hslO 182782..183648 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  CR921_RS01055 dusB 183641..184618 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  CR921_RS01060 - 184847..186115 (+) 1269 WP_101415519.1 peptidase -
  CR921_RS01065 - 186221..186664 (+) 444 WP_014607905.1 zinc-dependent MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35316.93 Da        Isoelectric Point: 6.1511

>NTDB_id=260908 CR921_RS01040 WP_101415518.1 181287..182225(+) (amiF) [Streptococcus thermophilus strain GABA]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRFVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKIDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGAMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIHDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=260908 CR921_RS01040 WP_101415518.1 181287..182225(+) (amiF) [Streptococcus thermophilus strain GABA]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATTTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGATAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCCCATGAGTTTTCTGGTGGTCAACGTCAA
AGGATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGCAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTCACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

52.787

97.756

0.516
  amiF Streptococcus thermophilus LMG 18311

52.459

97.756

0.513
  amiF Streptococcus salivarius strain HSISS4

52.131

97.756

0.51

Multiple sequence alignment