Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   SAO46_RS07940 Genome accession   NZ_CP025395
Coordinates   1596000..1597070 (-) Length   356 a.a.
NCBI ID   WP_000776416.1    Uniprot ID   -
Organism   Staphylococcus aureus O46     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591000..1602070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAO46_RS07900 (SAO46_01448) gcvPA 1591177..1592523 (-) 1347 WP_000019686.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAO46_RS07905 (SAO46_01449) gcvT 1592543..1593634 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SAO46_RS07910 (SAO46_01450) - 1593793..1594317 (-) 525 WP_001015120.1 shikimate kinase -
  SAO46_RS07915 - 1594307..1594453 (-) 147 WP_001789879.1 hypothetical protein -
  SAO46_RS07920 (SAO46_01451) comGF 1594550..1595047 (-) 498 WP_029656266.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAO46_RS07925 (SAO46_01452) comGE 1594965..1595264 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SAO46_RS07930 (SAO46_01453) comGD 1595251..1595697 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAO46_RS07935 (SAO46_01454) comGC 1595675..1595986 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAO46_RS07940 (SAO46_01455) comGB 1596000..1597070 (-) 1071 WP_000776416.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAO46_RS07945 (SAO46_01456) comGA 1597042..1598016 (-) 975 WP_000697222.1 competence type IV pilus ATPase ComGA Machinery gene
  SAO46_RS07950 - 1598068..1598691 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SAO46_RS07955 (SAO46_01458) - 1598688..1599017 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SAO46_RS07960 (SAO46_01459) - 1599017..1600003 (-) 987 WP_000161315.1 ROK family glucokinase -
  SAO46_RS07965 - 1600000..1600203 (-) 204 WP_000087561.1 YqgQ family protein -
  SAO46_RS07970 (SAO46_01460) - 1600184..1601647 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41510.00 Da        Isoelectric Point: 10.1430

>NTDB_id=260846 SAO46_RS07940 WP_000776416.1 1596000..1597070(-) (comGB) [Staphylococcus aureus O46]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKFNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYIKHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=260846 SAO46_RS07940 WP_000776416.1 1596000..1597070(-) (comGB) [Staphylococcus aureus O46]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTGATTTATAACAAATTTAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAAACATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAATTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.157

100

0.992
  comGB Staphylococcus aureus N315

99.157

100

0.992

Multiple sequence alignment