Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SPD_RS08425 Genome accession   NC_008533
Coordinates   1596535..1597806 (+) Length   423 a.a.
NCBI ID   WP_001113205.1    Uniprot ID   Q8DNP1
Organism   Streptococcus pneumoniae D39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591535..1602806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPD_RS08380 (SPD_1574) - 1592600..1593028 (-) 429 WP_000418176.1 NUDIX hydrolase -
  SPD_RS08385 (SPD_1575) - 1592994..1594097 (-) 1104 WP_000719717.1 site-2 protease family protein -
  SPD_RS08390 (SPD_1576) - 1594116..1594586 (-) 471 WP_000257105.1 DUF3013 family protein -
  SPD_RS08395 (SPD_1577) - 1594877..1595329 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  SPD_RS08400 - 1595366..1595545 (-) 180 WP_001132285.1 type II toxin-antitoxin system HicA family toxin -
  SPD_RS08405 (SPD_1578) - 1595682..1595861 (-) 180 WP_001809903.1 hypothetical protein -
  SPD_RS08415 (SPD_1579) - 1596026..1596265 (-) 240 WP_000818079.1 hypothetical protein -
  SPD_RS08425 (SPD_1580) rarA 1596535..1597806 (+) 1272 WP_001113205.1 replication-associated recombination protein A Machinery gene
  SPD_RS08435 (SPD_1582) - 1598353..1599672 (-) 1320 WP_000608887.1 glycoside hydrolase family 32 protein -
  SPD_RS08440 (SPD_1583) - 1599682..1600527 (-) 846 WP_000819520.1 carbohydrate ABC transporter permease -
  SPD_RS08445 (SPD_1584) - 1600529..1601431 (-) 903 WP_000032532.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46969.43 Da        Isoelectric Point: 5.9471

>NTDB_id=26026 SPD_RS08425 WP_001113205.1 1596535..1597806(+) (rarA) [Streptococcus pneumoniae D39]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=26026 SPD_RS08425 WP_001113205.1 1596535..1597806(+) (rarA) [Streptococcus pneumoniae D39]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DNP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57

Multiple sequence alignment