Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SPD_RS07505 Genome accession   NC_008533
Coordinates   1430268..1431056 (-) Length   262 a.a.
NCBI ID   WP_000940734.1    Uniprot ID   Q8DP01
Organism   Streptococcus pneumoniae D39     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1425268..1436056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPD_RS07480 (SPD_1407) - 1426254..1426766 (-) 513 WP_001049323.1 adenine phosphoribosyltransferase -
  SPD_RS07485 (SPD_1408) - 1426854..1427612 (-) 759 WP_001287230.1 class I SAM-dependent methyltransferase -
  SPD_RS11080 - 1427820..1427966 (+) 147 WP_000403102.1 hypothetical protein -
  SPD_RS07490 (SPD_1409) - 1428113..1429243 (-) 1131 WP_000229959.1 ABC transporter ATP-binding protein -
  SPD_RS07500 (SPD_1411) - 1429693..1430268 (-) 576 WP_000158722.1 cysteine hydrolase family protein -
  SPD_RS07505 (SPD_1412) codY 1430268..1431056 (-) 789 WP_000940734.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SPD_RS07515 (SPD_1413) - 1431320..1432894 (-) 1575 WP_000671113.1 DEAD/DEAH box helicase -
  SPD_RS07520 (SPD_1414) - 1433093..1434319 (-) 1227 WP_000841575.1 L-lactate MFS transporter -
  SPD_RS07525 (SPD_1415) - 1434509..1435825 (+) 1317 WP_000958943.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29756.11 Da        Isoelectric Point: 5.4646

>NTDB_id=26020 SPD_RS07505 WP_000940734.1 1430268..1431056(-) (codY) [Streptococcus pneumoniae D39]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=26020 SPD_RS07505 WP_000940734.1 1430268..1431056(-) (codY) [Streptococcus pneumoniae D39]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTCCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTGCCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGCAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DP01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

48.374

93.893

0.454

Multiple sequence alignment