Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CXR48_RS08060 Genome accession   NZ_CP025341
Coordinates   1615538..1616317 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CMT-6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610538..1621317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS08040 trmFO 1611225..1612532 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CXR48_RS08045 xerC 1612602..1613519 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  CXR48_RS08050 hslV 1613535..1614080 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  CXR48_RS08055 hslU 1614097..1615500 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  CXR48_RS08060 codY 1615538..1616317 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CXR48_RS08065 flgB 1616671..1617060 (+) 390 WP_063174820.1 flagellar basal body rod protein FlgB -
  CXR48_RS08070 flgC 1617060..1617512 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  CXR48_RS08075 fliE 1617523..1617843 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CXR48_RS08080 fliF 1617886..1619496 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  CXR48_RS08085 fliG 1619509..1620525 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CXR48_RS08090 fliH 1620518..1621273 (+) 756 WP_057080704.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=260163 CXR48_RS08060 WP_003154263.1 1615538..1616317(+) (codY) [Bacillus velezensis strain CMT-6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=260163 CXR48_RS08060 WP_003154263.1 1615538..1616317(+) (codY) [Bacillus velezensis strain CMT-6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCAGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment