Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CXL14_RS15105 Genome accession   NZ_CP025258
Coordinates   3060683..3061462 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. SJ-10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3055683..3066462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL14_RS15075 fliH 3055727..3056482 (-) 756 WP_014417769.1 flagellar assembly protein FliH -
  CXL14_RS15080 fliG 3056475..3057491 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CXL14_RS15085 fliF 3057504..3059114 (-) 1611 WP_101287867.1 flagellar basal-body MS-ring/collar protein FliF -
  CXL14_RS15090 fliE 3059157..3059477 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CXL14_RS15095 flgC 3059488..3059940 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  CXL14_RS15100 flgB 3059940..3060329 (-) 390 WP_089072433.1 flagellar basal body rod protein FlgB -
  CXL14_RS15105 codY 3060683..3061462 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CXL14_RS15110 hslU 3061500..3062903 (-) 1404 WP_101287868.1 HslU--HslV peptidase ATPase subunit -
  CXL14_RS15115 hslV 3062920..3063465 (-) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  CXL14_RS15120 xerC 3063481..3064398 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  CXL14_RS15125 trmFO 3064468..3065775 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=259571 CXL14_RS15105 WP_003154263.1 3060683..3061462(-) (codY) [Bacillus sp. SJ-10]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=259571 CXL14_RS15105 WP_003154263.1 3060683..3061462(-) (codY) [Bacillus sp. SJ-10]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACA
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment