Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQ228_RS08170 Genome accession   NZ_CP030250
Coordinates   1588914..1589657 (-) Length   247 a.a.
NCBI ID   WP_011681551.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583914..1594657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS08140 - 1584185..1585129 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  DQ228_RS08145 sepM 1585214..1586290 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  DQ228_RS08150 coaD 1586268..1586765 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  DQ228_RS08155 rsmD 1586799..1587398 (-) 600 Protein_1595 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DQ228_RS08160 trxB 1587489..1588442 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  DQ228_RS08165 - 1588475..1588699 (-) 225 WP_082309114.1 DUF4059 family protein -
  DQ228_RS08170 amiE 1588914..1589657 (-) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein Regulator
  DQ228_RS08175 - 1589657..1590403 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  DQ228_RS08180 - 1590791..1591621 (-) 831 WP_014608653.1 transporter substrate-binding domain-containing protein -
  DQ228_RS08185 - 1592081..1592314 (-) 234 WP_002947030.1 hypothetical protein -
  DQ228_RS08190 dinB 1592612..1593715 (-) 1104 WP_014608654.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7813

>NTDB_id=259555 DQ228_RS08170 WP_011681551.1 1588914..1589657(-) (amiE) [Streptococcus thermophilus strain CS20]
MISIKNVTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=259555 DQ228_RS08170 WP_011681551.1 1588914..1589657(-) (amiE) [Streptococcus thermophilus strain CS20]
ATGATTAGTATCAAAAATGTGACCAAGGAATTTTCAGGACAAAAGGTTCTAGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGCCGT
AAGTTGGCTATGGTTTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACCAAGATTGCGAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364

Multiple sequence alignment