Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   DOP62_RS08360 Genome accession   NZ_CP030139
Coordinates   1706707..1707786 (+) Length   359 a.a.
NCBI ID   WP_338437778.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701707..1712786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS08335 (DOP62_03600) glyQ 1702306..1703184 (-) 879 WP_208675661.1 glycine--tRNA ligase subunit alpha -
  DOP62_RS08340 (DOP62_03595) - 1703287..1704237 (-) 951 WP_208675660.1 DUF4335 domain-containing protein -
  DOP62_RS08345 (DOP62_03590) - 1704244..1704930 (-) 687 WP_228383202.1 DUF3038 domain-containing protein -
  DOP62_RS08350 (DOP62_03585) - 1705038..1705553 (+) 516 WP_208675659.1 adenine phosphoribosyltransferase -
  DOP62_RS08355 (DOP62_03580) - 1705557..1706552 (+) 996 WP_208675658.1 ABC transporter permease -
  DOP62_RS08360 (DOP62_03575) pilM 1706707..1707786 (+) 1080 WP_338437778.1 type IV pilus assembly protein PilM Machinery gene
  DOP62_RS08365 (DOP62_03570) - 1707789..1708511 (+) 723 WP_208675657.1 PilN domain-containing protein -
  DOP62_RS08370 (DOP62_03565) - 1708508..1709320 (+) 813 WP_208675656.1 pilus assembly protein PilO -
  DOP62_RS08375 (DOP62_03560) - 1709384..1711717 (+) 2334 WP_261789994.1 secretin N-terminal domain-containing protein -
  DOP62_RS08380 (DOP62_03555) - 1711812..1712525 (-) 714 WP_208675655.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39428.27 Da        Isoelectric Point: 4.3677

>NTDB_id=259300 DOP62_RS08360 WP_338437778.1 1706707..1707786(+) (pilM) [Synechococcus elongatus PCC 11801]
MVGIFSKFLGGDKSRLGVEITPERINLAHIGRKGNRLLLQDFVSVDLPDGLFQDGRVIDSFSLSDLLRTAISDNRIKTKK
VSTAVPGREVITRLLPMPAELDDAELHETLLNQEAALFLPFPREEADIDYLKLDYFLDIDEVEKLHVLLVATRRQVTDTY
LDLFAQAGLTPDIVEVGSFALIRTIRESLRQYGLQEAVILLNIEYDLTEIVIIVGGVPRFSRTIAMGTQQWQRAAAQAGL
ENIGRGLDFLQGQALSLLEPPADLLSQGLVRSAADLCDEVRRSADFYLSQESDIEVAKLYVAGPGSALPTLPEFLGQRLG
LPVELVDPVEGLGLEVPDTLYLPNRADVGVVLGLATRGV

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=259300 DOP62_RS08360 WP_338437778.1 1706707..1707786(+) (pilM) [Synechococcus elongatus PCC 11801]
GTGGTCGGCATATTTTCTAAGTTTCTTGGTGGGGATAAATCTCGCCTTGGGGTGGAGATCACCCCAGAGCGGATCAACCT
TGCCCATATCGGCCGCAAGGGGAACCGGTTGCTGCTGCAGGATTTTGTTTCGGTCGACTTGCCCGATGGTTTGTTCCAAG
ACGGGCGAGTCATTGACAGCTTTAGCTTGTCCGATTTACTCCGCACTGCTATCAGTGACAACCGCATTAAAACCAAAAAG
GTTTCTACGGCAGTCCCCGGGCGTGAGGTGATCACGCGGCTGCTGCCGATGCCAGCTGAGCTGGATGATGCGGAGTTGCA
CGAGACATTGCTCAATCAAGAAGCAGCGCTGTTTCTGCCCTTCCCCCGTGAAGAAGCTGATATTGACTACCTCAAACTGG
ATTACTTCCTCGATATTGATGAGGTCGAAAAGCTGCATGTCTTGCTGGTGGCGACCCGGCGACAAGTTACCGACACCTAT
CTCGATCTCTTTGCCCAAGCGGGTCTAACGCCCGACATCGTGGAAGTTGGGAGCTTCGCACTCATTCGCACCATTCGCGA
ATCCCTGCGGCAGTACGGTCTTCAAGAAGCCGTCATCCTCCTTAATATCGAATATGACCTCACCGAGATTGTGATCATCG
TTGGCGGGGTGCCTCGCTTCAGCCGCACAATCGCCATGGGAACCCAGCAATGGCAACGTGCGGCCGCCCAAGCAGGTCTT
GAAAATATCGGCCGCGGCCTTGATTTTCTACAGGGACAAGCACTCTCGCTACTCGAGCCGCCAGCCGATCTCCTCTCGCA
AGGTCTAGTGCGATCGGCGGCTGATCTCTGCGACGAAGTGCGGCGATCGGCAGACTTCTATCTCAGTCAAGAAAGTGATA
TTGAAGTCGCCAAGCTCTACGTAGCCGGCCCCGGTTCTGCCTTGCCAACTTTGCCTGAGTTCTTAGGGCAACGCCTGGGT
CTGCCGGTGGAGCTCGTTGATCCGGTGGAAGGACTGGGGCTGGAAGTGCCCGACACGCTCTACTTGCCCAACCGTGCTGA
CGTGGGTGTGGTACTTGGTTTGGCCACGCGAGGAGTGTAG

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

46.049

100

0.471