Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DP112_RS04415 Genome accession   NZ_CP030125
Coordinates   870287..872029 (+) Length   580 a.a.
NCBI ID   WP_114866440.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 865287..877029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS04395 (DP112_04395) - 865856..866674 (+) 819 WP_114866438.1 NAD kinase -
  DP112_RS04400 (DP112_04400) - 866674..867567 (+) 894 WP_012027041.1 RluA family pseudouridine synthase -
  DP112_RS04405 (DP112_04405) pta 867585..868559 (+) 975 WP_012775151.1 phosphate acetyltransferase -
  DP112_RS04410 (DP112_04410) - 868561..870300 (+) 1740 WP_114866439.1 ABC transporter ATP-binding protein -
  DP112_RS04415 (DP112_04415) rcrQ 870287..872029 (+) 1743 WP_114866440.1 ABC transporter ATP-binding protein Regulator
  DP112_RS04420 (DP112_04420) - 872013..872405 (+) 393 WP_164503906.1 PaaI family thioesterase -
  DP112_RS04425 (DP112_04425) mutY 872639..873799 (+) 1161 WP_164503907.1 A/G-specific adenine glycosylase -
  DP112_RS04430 (DP112_04430) - 874462..875262 (-) 801 WP_074391077.1 XRE family transcriptional regulator -
  DP112_RS04435 (DP112_04435) - 875393..875863 (+) 471 WP_074391076.1 hypothetical protein -
  DP112_RS04440 (DP112_04440) - 875883..876425 (+) 543 WP_074391075.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64470.48 Da        Isoelectric Point: 5.0917

>NTDB_id=258943 DP112_RS04415 WP_114866440.1 870287..872029(+) (rcrQ) [Streptococcus suis strain HA1003]
MGQSSFKELVRLVLRQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIADGQVLLGILGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQHLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMTGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAEREIDSEELKGAISFENVSFSYSPDRSLIEQLNINVKSGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQITLDGVPI
SQYSRENLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEALSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=258943 DP112_RS04415 WP_114866440.1 870287..872029(+) (rcrQ) [Streptococcus suis strain HA1003]
ATGGGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACGCCAGCCTCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTGCTTCTGACAGTTTATCTGCCGATTTTGATTGGTCAGGCAGTCGATGCAGTATTGATAGCAGATGGTC
AGGTCTTACTCGGTATCTTAGGCAAAATGGTAATGGTTATCTTGCTTAATACGCTGGTGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTACGGAATGGTGGCCGATTTGCGTGAACAGGTCTATGTGAAGCTGCACCAGATGCCCCTATCTTA
TCTTGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTAACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGACA
ACAGACTCAGGCACGTGGGAAGCAATCTCAGCATTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGACCAATATGCGACCTATTCCCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGCACTCGCTTTATCAATGCTATTATTTATGCCTTGCTTGCAGGACTTGGAGCTCTGAGAATTAT
GACAGGGAATTTCACAGTGGGATCGCTGACAACCTTTCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGACTGTTTGCTATCTTGGCTTTAGATAGCATTGAC
GATCAGGCTGAGCGGGAAATTGACTCTGAGGAGCTGAAGGGAGCTATTTCCTTTGAAAATGTGTCTTTCTCTTATAGCCC
TGACCGTTCTCTTATAGAACAGTTGAACATTAATGTCAAATCTGGCCAAAAGGTAGCCATTGTTGGACCTACTGGTGCAG
GGAAATCAACCATGATTAACCTGCTTATGCGCTTCTACGATGTAACGGCTGGTCAAATTACTTTAGATGGAGTTCCGATT
AGCCAGTACAGTCGTGAGAATCTTCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACACGAGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGATTTCT
TTATTCGTCAGCTTCCGCAGGGGTACGATACAGTTTTGGCAGATGGAGGTGAAGCCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTTAAAATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACTAGCTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGACGGAAAAATTGTTGAACAAGGAAATCATGAAGCATTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(353-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.801

97.759

0.379