Detailed information NTG0258919

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: DP112_RS01170
• Genome accession: NZ_CP030125
• Coordinates: 198776..201265 (-)
• Length: 829 a.a.
• NCBI ID: WP_114866150.1
• Uniprot ID: -
• Organism: Streptococcus suis strain HA1003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 193776..206265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DP112_RS01145 (DP112_01145)	dinB	194606..195673 (+)	1068	WP_014637367.1	DNA polymerase IV	-
DP112_RS01150 (DP112_01150)	-	195716..196135 (+)	420	WP_044767603.1	Rrf2 family transcriptional regulator	-
DP112_RS01155 (DP112_01155)	-	196271..196897 (+)	627	WP_114866148.1	NAD(P)-dependent oxidoreductase	-
DP112_RS01160 (DP112_01160)	-	197002..197922 (+)	921	WP_114866149.1	PfkB family carbohydrate kinase	-
DP112_RS01165 (DP112_01165)	-	197970..198608 (+)	639	WP_164503894.1	endonuclease III domain-containing protein	-
DP112_RS01170 (DP112_01170)	recD/recD2/recDB	198776..201265 (-)	2490	WP_114866150.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DP112_RS01175 (DP112_01175)	lepB	201328..201957 (-)	630	WP_114866151.1	signal peptidase I	-
DP112_RS01180 (DP112_01180)	rnhC	201967..202857 (-)	891	WP_024400395.1	ribonuclease HIII	-
DP112_RS01185 (DP112_01185)	-	202942..203925 (+)	984	WP_105212203.1	Gfo/Idh/MocA family oxidoreductase	-
DP112_RS01190 (DP112_01190)	-	204274..205485 (+)	1212	WP_164503895.1	LysM domain-containing protein	-

Sequence

Protein

• Length: 829 a.a.
• Molecular weight: 92918.05 Da
• Isoelectric Point: 4.5336

>NTDB_id=258919 DP112_RS01170 WP_114866150.1 198776..201265(-) (recD/recD2/recDB) [Streptococcus suis strain HA1003]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSDHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELAPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPATEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEDGELEFLHNEQAFRQGDRVIHLINDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKESLTENNESKTATATQNQPPAQSDRLEQTEPVTKNSQQLSLLDQDQPEKTSGLPR
EYILTVDNLLTIDPMIGIDQADIEEFFKA

Nucleotide

• Length: 2490 bp

>NTDB_id=258919 DP112_RS01170 WP_114866150.1 198776..201265(-) (recD/recD2/recDB) [Streptococcus suis strain HA1003]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATCGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAACAGCTGCAAATTTCGCGTTACGAACGTAGC
AAGCCTACCTCAGCTGGTCTGGTTAAGTATTTCTCCAGCGACCATTTCAAGGGAATTGGACGAAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAGAAACTGACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTGGAGAAACTCCGCCTCAATTATGGCACCGAGCTGATCTTGGCAAAACTAGCCGAGTAT
GGTATTCCAAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGCCTCGGCTTCACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGCGATT
CCCCCCAACGCTTTCGGGCAGGTATGCTCTTTAGCCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTACTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGCCCCCGCTGCTGTTGCCAAAGA
ATTGACGGGATTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACTTGACCCGCCTGATGGGAAAAAATGGCTTCAAGCCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAAGTATGTCTTCCCTGACCTATGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTATTCATTCTGACAGGCGGACCAGGGACAGGAAAAACTACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCTGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGCCTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAGACCCAAGTTCTGATTGTCGGCGATGCGGAACAATTACCTTCTGTCAGTCCCGGTCAGGTCCTAGCT
GACCTCTTGAAAATCGACAAGCTACCCAGCATCACTCTGGAACGCATCTACCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGTGCCCTGCCGAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAACGCATTGTCGGCGCAGCTATCAAGTCAGGTATCCCTGCAACAGAGGTCCAG
ATCCTCGCACCTATGTACCGTGGTGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCCCTAGA
AGACGGTGAGCTGGAATTCCTCCACAACGAGCAGGCCTTCCGCCAAGGCGACCGAGTCATCCACCTTATCAACGATGCTG
AGGCCAATGTCTTCAATGGTGATCTGGGCTATATTACTGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGTAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGTGAGTTCCAGGTGGTCATCCTTCCCATTACCCGCACCAGCCACCGCATGCTCCAGCGCA
ACCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTAGGCGAAATCTCCGCCTTTGACTACGCCGTC
AAAAACGCCGGAACCGTTAGGAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGACAGTAAGGAAAG
CCTGACTGAAAACAACGAAAGCAAAACAGCCACAGCCACACAAAACCAGCCACCTGCCCAGTCAGATAGGCTAGAACAAA
CAGAGCCCGTAACAAAAAACAGCCAGCAACTGTCCCTTCTCGACCAAGACCAGCCAGAAAAAACAAGTGGCCTACCCAGA
GAATACATTCTGACGGTGGACAACCTGCTAACCATCGACCCCATGATCGGCATAGATCAGGCAGATATTGAAGAGTTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (663-710)

• AAA domain (AAA_30) (332-529)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (575-645)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.27	91.194	0.376