Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   DGEO_RS10625 Genome accession   NC_008025
Coordinates   1679732..1681963 (-) Length   743 a.a.
NCBI ID   WP_049782957.1    Uniprot ID   -
Organism   Deinococcus geothermalis DSM 11300     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1674732..1686963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGEO_RS10605 (Dgeo_1576) trxB 1675211..1676194 (-) 984 WP_011530705.1 thioredoxin-disulfide reductase -
  DGEO_RS10615 (Dgeo_1577) - 1676893..1678656 (+) 1764 WP_011530706.1 30S ribosomal protein S1 -
  DGEO_RS10620 (Dgeo_1578) - 1678744..1679727 (+) 984 WP_011530707.1 Gfo/Idh/MocA family protein -
  DGEO_RS10625 (Dgeo_1579) comEC 1679732..1681963 (-) 2232 WP_049782957.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DGEO_RS16565 comEA 1681963..1682340 (-) 378 WP_041221245.1 ComEA family DNA-binding protein Machinery gene
  DGEO_RS10635 (Dgeo_1580) yedA 1682419..1683309 (+) 891 WP_041221247.1 drug/metabolite exporter YedA -
  DGEO_RS10640 (Dgeo_1581) - 1683430..1683729 (+) 300 WP_011530710.1 hypothetical protein -
  DGEO_RS10645 (Dgeo_1582) - 1683779..1684852 (-) 1074 WP_011530711.1 methyltransferase domain-containing protein -
  DGEO_RS10650 (Dgeo_1583) - 1684913..1686328 (+) 1416 WP_041221249.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 78056.30 Da        Isoelectric Point: 11.3198

>NTDB_id=25888 DGEO_RS10625 WP_049782957.1 1679732..1681963(-) (comEC) [Deinococcus geothermalis DSM 11300]
MTGHSTVASAASRTARSTRAPAGRLAWPVPLAFGVMGGILLGLGVWWGALVLLAGTVFAVLDGRTALAGLALAGGGLGFG
AERLNAAQPDRMSPWVGAPVTLVGDWDGQFLRLSDPPARVALSPKPRVLPGRLVVSGRLVRPEGRHVPGGFDQAAWLRGQ
GGLFVPTPTIVLVAARVRSSTPEGGVRGWFRRGLTAGLGERQAALMQAIELGDRNEIRREDFAEGYRVQEAFARAGLSHL
MALSGQNVGLLTGAVVWLLSWLRVPLGWRYGAALLFLAPYLLLVGVSPSLLRAVLMGGAVLAGYALGRGRLDPYGTLALA
AVLCLLLFPRWLLDVGFQLSFLAVLGLTLSARLAERLPARWPRWLRLPLAATLLAELATLPVVAGTFGQLPLVGLPANLL
AGALMAALVPLGFVAGLLGPFALAVNWLTGLLASLLLGVVALFGRAPVLTWGTVGAGGCVAYGAAALAGVLWLRGRVRAP
VALGTLLACAVLTLLPGLLRPARELVFLDVGQGDSTLIRARGLSVLVDGGGSVGSDFDVGTRTVVPALRALGVRALDVVV
ATHADTDHIEGLSGVLRALPVGELWIGRRKTDDPVLAELLQAARERGVPVREVRRGDRVSVDGVTLTVLWPPGRFWSTQD
NDNSVALTVESRGFRAALLGDLPDPAEAQIGVGKLDLLKAAHHGSRHSTGEAILKESTPHDVLISVGRNTYGHPHPDVLK
RIGEVGAKVWRTDQLGTVRWPLP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=25888 DGEO_RS10625 WP_049782957.1 1679732..1681963(-) (comEC) [Deinococcus geothermalis DSM 11300]
ATGACCGGGCACTCCACTGTGGCCTCTGCTGCTTCCCGGACCGCCCGCAGCACGCGCGCCCCCGCGGGCCGTCTGGCCTG
GCCGGTGCCGCTCGCGTTCGGTGTAATGGGCGGCATCCTGCTGGGCCTGGGGGTGTGGTGGGGCGCTTTGGTGCTGCTGG
CCGGTACAGTCTTCGCGGTGCTGGATGGCCGGACAGCCCTGGCCGGGTTGGCGCTGGCCGGTGGAGGGCTGGGCTTCGGC
GCAGAACGTCTGAACGCCGCGCAACCCGACCGGATGTCCCCTTGGGTCGGCGCGCCGGTCACCCTTGTCGGTGACTGGGA
CGGTCAATTCCTGCGCCTCTCCGATCCACCCGCACGAGTGGCGCTTTCTCCCAAACCGCGTGTTTTGCCGGGGCGGTTGG
TCGTGAGTGGACGGCTGGTTCGTCCGGAGGGACGGCACGTACCGGGTGGTTTCGACCAGGCGGCCTGGTTGCGGGGACAG
GGCGGCTTGTTCGTGCCGACGCCAACGATCGTCCTGGTTGCGGCGCGGGTTCGCTCGTCCACCCCCGAGGGCGGCGTGCG
CGGCTGGTTTCGCCGGGGCCTCACCGCGGGGCTGGGCGAGCGCCAGGCCGCCCTGATGCAGGCGATTGAGCTGGGTGACC
GGAACGAGATCCGCCGCGAGGATTTCGCGGAAGGCTACCGCGTACAGGAGGCGTTCGCCCGTGCGGGCCTCTCGCACCTG
ATGGCCCTCAGCGGACAAAATGTGGGGTTGCTGACGGGTGCGGTGGTCTGGCTGCTGTCTTGGCTACGAGTGCCTCTGGG
CTGGCGGTACGGGGCGGCCCTGCTCTTTCTCGCGCCGTACCTCTTGCTGGTTGGGGTCTCGCCTAGCCTCCTCCGGGCGG
TGCTGATGGGAGGTGCGGTGCTGGCGGGCTACGCGCTGGGACGGGGGCGGCTGGACCCCTACGGGACGCTTGCCCTCGCC
GCCGTCCTGTGTCTGCTGCTCTTTCCTCGGTGGCTGCTGGACGTGGGCTTTCAACTGTCGTTCCTGGCCGTGCTGGGACT
GACCCTCTCGGCGCGACTGGCAGAGCGGCTCCCCGCCCGCTGGCCCCGCTGGCTCCGTCTCCCGCTGGCGGCAACCCTGC
TGGCCGAACTCGCCACGCTGCCCGTGGTCGCGGGAACGTTTGGGCAGCTTCCGCTGGTGGGCCTGCCCGCCAACCTGCTT
GCGGGCGCGCTGATGGCGGCGCTGGTGCCGTTGGGCTTTGTGGCTGGGTTGCTGGGGCCGTTTGCGCTGGCCGTCAACTG
GCTCACCGGCCTGCTGGCCTCGCTGCTCCTGGGGGTGGTGGCGCTGTTTGGCCGGGCCCCCGTGCTCACCTGGGGGACGG
TGGGCGCCGGGGGCTGCGTGGCTTACGGCGCTGCGGCTCTGGCGGGCGTGCTGTGGCTGCGGGGCCGCGTGCGTGCGCCC
GTCGCTCTGGGCACACTGCTCGCCTGCGCCGTCCTGACCCTGCTCCCGGGCCTGCTGCGGCCCGCCCGCGAACTGGTGTT
TCTCGATGTCGGCCAGGGGGACAGCACCCTGATCCGGGCACGGGGCCTGAGCGTGCTGGTGGACGGCGGGGGTTCGGTTG
GCTCGGATTTCGATGTGGGAACCCGAACAGTGGTTCCCGCCCTGCGTGCTCTGGGCGTTCGTGCGCTGGATGTGGTGGTC
GCGACCCACGCCGACACCGACCATATCGAGGGCCTCTCTGGCGTGCTGCGGGCCCTCCCGGTCGGTGAACTGTGGATCGG
GCGGCGCAAGACGGATGACCCTGTTCTGGCCGAACTCCTGCAGGCAGCGCGGGAAAGAGGGGTGCCGGTCCGCGAGGTGC
GGCGCGGCGACCGGGTGAGCGTGGACGGCGTGACACTCACGGTCCTTTGGCCGCCTGGCCGCTTCTGGTCCACCCAGGAC
AACGACAACAGCGTCGCGCTCACCGTCGAGTCCCGCGGCTTCCGCGCCGCCCTCCTCGGCGACCTCCCCGACCCAGCCGA
GGCGCAGATCGGCGTGGGCAAGCTCGATCTGCTGAAAGCCGCGCACCACGGCAGCCGCCACAGCACCGGCGAGGCCATCC
TGAAGGAAAGCACCCCGCACGACGTGCTGATCAGCGTGGGGCGCAACACCTACGGCCACCCACACCCCGACGTGCTGAAG
CGTATTGGGGAGGTAGGTGCGAAGGTCTGGCGGACGGACCAGCTGGGAACCGTCCGCTGGCCGCTGCCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(228-474)

Beta-lactamase superfamily domain (Lactamase_B_2)

(542-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.263

98.385

0.672

Multiple sequence alignment