Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DGEO_RS10280 Genome accession   NC_008025
Coordinates   1606288..1606956 (+) Length   222 a.a.
NCBI ID   WP_011530642.1    Uniprot ID   A0A4R5G963
Organism   Deinococcus geothermalis DSM 11300     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1601288..1611956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGEO_RS10260 (Dgeo_1508) - 1603024..1603269 (-) 246 WP_011530637.1 glutaredoxin family protein -
  DGEO_RS10265 (Dgeo_1509) infC 1603384..1603998 (-) 615 WP_011530638.1 translation initiation factor IF-3 -
  DGEO_RS10270 (Dgeo_1510) - 1604235..1604912 (+) 678 WP_011530639.1 NrtR DNA-binding winged helix domain-containing protein -
  DGEO_RS16560 (Dgeo_1511) - 1605109..1605723 (+) 615 WP_157448390.1 hypothetical protein -
  DGEO_RS10275 - 1605951..1606241 (+) 291 WP_041221221.1 YbaB/EbfC family nucleoid-associated protein -
  DGEO_RS10280 (Dgeo_1513) recR 1606288..1606956 (+) 669 WP_011530642.1 recombination mediator RecR Machinery gene
  DGEO_RS10285 (Dgeo_1514) - 1607038..1607658 (+) 621 WP_011530643.1 GNAT family N-acetyltransferase -
  DGEO_RS10290 (Dgeo_1515) - 1607745..1608230 (+) 486 WP_011530644.1 hypothetical protein -
  DGEO_RS10295 (Dgeo_1516) - 1608271..1609374 (-) 1104 WP_011530645.1 M23 family metallopeptidase -
  DGEO_RS10300 (Dgeo_1517) dtd 1609418..1609864 (-) 447 WP_011530646.1 D-aminoacyl-tRNA deacylase -
  DGEO_RS10305 (Dgeo_1518) - 1609866..1610138 (-) 273 WP_041221223.1 DUF1844 domain-containing protein -
  DGEO_RS10310 (Dgeo_1519) - 1610247..1610789 (-) 543 WP_232220920.1 RNA polymerase sigma factor -
  DGEO_RS10315 (Dgeo_1520) - 1610952..1611299 (+) 348 WP_011530649.1 FUN14 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24180.59 Da        Isoelectric Point: 5.1529

>NTDB_id=25887 DGEO_RS10280 WP_011530642.1 1606288..1606956(+) (recR) [Deinococcus geothermalis DSM 11300]
MKYPPSLVGLIRELSRLPGIGPKSAQRLAFYLFEQPREDIERLAGAILEAKRDLHTCPVCFNITDAERCDVCSDPTRDQS
VICVVEEPGDVIAIERSGEYRGLYHVLHGALSPMNGVGPDRLQIRPLLPRVQDGMEVILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALSGRRRVSEPASPPPPRRNDEEQDGAPARPPSH

Nucleotide


Download         Length: 669 bp        

>NTDB_id=25887 DGEO_RS10280 WP_011530642.1 1606288..1606956(+) (recR) [Deinococcus geothermalis DSM 11300]
ATGAAATATCCGCCTTCGCTGGTGGGGCTGATCCGGGAACTCTCGCGCCTGCCCGGCATCGGGCCGAAAAGCGCGCAGCG
GCTGGCCTTTTATCTGTTCGAGCAGCCACGAGAAGACATCGAGCGGCTGGCCGGAGCAATCTTGGAGGCCAAGCGCGACC
TGCACACCTGCCCGGTCTGTTTCAACATTACCGACGCGGAACGCTGTGACGTGTGCAGCGACCCCACGCGCGATCAGAGC
GTGATTTGCGTGGTGGAAGAACCCGGCGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGCGGGCTGTACCACGTGCT
GCACGGCGCCCTAAGTCCGATGAACGGCGTGGGGCCGGACCGGCTGCAGATCCGCCCCCTACTGCCGCGGGTGCAGGACG
GCATGGAGGTGATCCTGGCGACCGGCACGACGGTGGAGGGCGACGCAACCGCGCTCTATCTCCAGCGCCTGCTGGAGCCG
CTGGGTGCAGTGGTGAGCCGCATCGCCTACGGGCTGCCGGTGGGCGGCGCGCTGGAATACGCCGATGAGGTGACGCTGGG
CCGCGCCCTGAGCGGTAGGCGGCGGGTGAGTGAACCGGCCTCCCCGCCACCGCCCCGCCGCAACGATGAGGAGCAAGACG
GCGCTCCCGCTCGGCCCCCGTCCCATTAG

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5G963

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

81.448

99.55

0.811

Multiple sequence alignment