Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DGEO_RS07405 Genome accession   NC_008025
Coordinates   1003062..1003715 (+) Length   217 a.a.
NCBI ID   WP_049782925.1    Uniprot ID   -
Organism   Deinococcus geothermalis DSM 11300     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 998062..1008715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGEO_RS07375 (Dgeo_0932) - 999267..999836 (-) 570 WP_011530070.1 FlgD immunoglobulin-like domain containing protein -
  DGEO_RS07380 (Dgeo_0933) gatC 999906..1000196 (+) 291 WP_011530071.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  DGEO_RS07385 (Dgeo_0934) serS 1000245..1001558 (+) 1314 WP_011530072.1 serine--tRNA ligase -
  DGEO_RS07390 (Dgeo_0935) - 1001693..1002097 (+) 405 WP_011530073.1 hypothetical protein -
  DGEO_RS07395 (Dgeo_0936) - 1002116..1002409 (-) 294 WP_011530074.1 hypothetical protein -
  DGEO_RS07400 (Dgeo_0937) - 1002566..1003090 (+) 525 WP_133008589.1 hypothetical protein -
  DGEO_RS07405 (Dgeo_0938) comF 1003062..1003715 (+) 654 WP_049782925.1 ComF family protein Machinery gene
  DGEO_RS07410 (Dgeo_0939) - 1003785..1004288 (+) 504 WP_041221063.1 hypothetical protein -
  DGEO_RS07415 (Dgeo_0940) - 1004331..1005026 (+) 696 WP_011530078.1 DUF2259 domain-containing protein -
  DGEO_RS07420 (Dgeo_0941) - 1005063..1006721 (-) 1659 WP_011530079.1 VOC family protein -
  DGEO_RS07425 (Dgeo_0942) - 1006792..1007286 (-) 495 WP_011530080.1 MarR family winged helix-turn-helix transcriptional regulator -
  DGEO_RS07430 (Dgeo_0943) - 1007364..1008632 (-) 1269 WP_011530081.1 aminopeptidase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23231.16 Da        Isoelectric Point: 11.6147

>NTDB_id=25883 DGEO_RS07405 WP_049782925.1 1003062..1003715(+) (comF) [Deinococcus geothermalis DSM 11300]
MSLPPQGRFEVQDFLRAFLPRRCPGCDGQLGREAGLCAGCRAQLRPRVERYSPLSPRPQGHLVTLGPYRGVTRRAVRALK
FGGARELAEVLGAVLAAGIPAVWGVRAVVPVPLHPRRERERGFNQSALLAEVVAARLGVPCVPALRRTRATAQQARLHAA
ERVMNVAGAFQADPRLLPSGPVLLLDDVMTTGSTLLACRDALAGAGVTPVYFAVLAH

Nucleotide


Download         Length: 654 bp        

>NTDB_id=25883 DGEO_RS07405 WP_049782925.1 1003062..1003715(+) (comF) [Deinococcus geothermalis DSM 11300]
ATGAGCTTGCCGCCGCAGGGCAGGTTTGAGGTGCAGGACTTCCTGCGGGCGTTCCTGCCGCGCCGCTGTCCGGGGTGCGA
CGGGCAACTCGGGCGGGAGGCGGGCCTGTGTGCGGGCTGCCGTGCTCAGCTGCGGCCCCGAGTGGAACGCTACTCGCCCC
TGTCACCCCGCCCGCAGGGGCACCTCGTCACATTGGGGCCGTACCGGGGGGTGACGCGCCGGGCCGTGCGAGCGCTGAAG
TTTGGCGGAGCGCGGGAACTGGCGGAGGTGCTGGGAGCGGTACTGGCCGCAGGGATTCCGGCGGTATGGGGCGTTCGGGC
CGTGGTGCCGGTGCCACTGCACCCCCGCCGTGAGCGGGAGCGTGGCTTCAACCAGTCAGCGCTGCTGGCGGAGGTGGTGG
CCGCCCGGCTGGGCGTTCCGTGTGTCCCAGCTCTGCGCCGCACCCGCGCGACCGCGCAGCAGGCCCGCTTGCACGCTGCC
GAGCGGGTGATGAATGTGGCTGGAGCGTTCCAGGCTGACCCTCGGTTGCTTCCTTCCGGCCCGGTCCTCCTGCTGGACGA
CGTAATGACCACCGGCAGCACTTTATTGGCCTGCCGGGACGCGCTGGCTGGAGCCGGGGTGACGCCGGTGTACTTCGCGG
TTCTCGCACATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(126-216)

Double zinc ribbon domain (DZR_2)

(15-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.157

94.009

0.631

Multiple sequence alignment