Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | CXB69_RS08730 | Genome accession | NZ_CP025206 |
| Coordinates | 1759700..1760707 (+) | Length | 335 a.a. |
| NCBI ID | WP_112234087.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain WiKim0074 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1754700..1765707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXB69_RS08695 (CXB69_08685) | - | 1755321..1756109 (+) | 789 | WP_061827022.1 | hypothetical protein | - |
| CXB69_RS08700 (CXB69_08690) | - | 1756106..1756720 (+) | 615 | WP_016265380.1 | hypothetical protein | - |
| CXB69_RS08710 (CXB69_08700) | - | 1756907..1757281 (-) | 375 | WP_011375004.1 | hypothetical protein | - |
| CXB69_RS08715 (CXB69_08705) | - | 1757378..1757878 (+) | 501 | WP_016265379.1 | VanZ family protein | - |
| CXB69_RS08720 (CXB69_08710) | - | 1757969..1758700 (+) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CXB69_RS08725 (CXB69_08715) | comGA | 1758817..1759707 (+) | 891 | WP_025016380.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CXB69_RS08730 (CXB69_08720) | comGB | 1759700..1760707 (+) | 1008 | WP_112234087.1 | type II secretion system F family protein | Machinery gene |
| CXB69_RS08735 (CXB69_08725) | comGC | 1760704..1761003 (+) | 300 | WP_025016383.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CXB69_RS08740 (CXB69_08730) | comGD | 1761023..1761427 (+) | 405 | WP_235596237.1 | hypothetical protein | Machinery gene |
| CXB69_RS08745 (CXB69_08735) | comGE | 1761414..1761719 (+) | 306 | WP_016265375.1 | hypothetical protein | Machinery gene |
| CXB69_RS08750 (CXB69_08740) | comGF | 1761694..1762206 (+) | 513 | WP_035145013.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CXB69_RS08755 (CXB69_08745) | - | 1762169..1762507 (+) | 339 | WP_035145011.1 | hypothetical protein | - |
| CXB69_RS08760 (CXB69_08750) | - | 1762622..1763641 (+) | 1020 | WP_235596233.1 | class I SAM-dependent methyltransferase | - |
| CXB69_RS08765 (CXB69_08755) | - | 1763663..1764859 (+) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| CXB69_RS08770 (CXB69_08760) | - | 1764914..1765372 (+) | 459 | WP_035145008.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38459.39 Da Isoelectric Point: 9.5446
>NTDB_id=258822 CXB69_RS08730 WP_112234087.1 1759700..1760707(+) (comGB) [Latilactobacillus sakei strain WiKim0074]
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVHFPADYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRHREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFFLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVHFPADYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRHREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFFLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=258822 CXB69_RS08730 WP_112234087.1 1759700..1760707(+) (comGB) [Latilactobacillus sakei strain WiKim0074]
ATGTATAAGTCACGACAACAAGCGCAATTTTATGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTACAACAAGCTTTTGCTTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGTGACAGTCTGGCAGTCAGTTTAGCGCATGTTCATTTTCCGGCTGATTATGTTGGTCAAATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAGCGCCATCGAGAAATACG
GGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTTTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTCACGACAACAAGCGCAATTTTATGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTACAACAAGCTTTTGCTTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGTGACAGTCTGGCAGTCAGTTTAGCGCATGTTCATTTTCCGGCTGATTATGTTGGTCAAATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAGCGCCATCGAGAAATACG
GGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTTTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.209 |
100 |
0.982 |