Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | DGEO_RS04515 | Genome accession | NC_008025 |
| Coordinates | 378749..379891 (-) | Length | 380 a.a. |
| NCBI ID | WP_011529521.1 | Uniprot ID | Q1J1F7 |
| Organism | Deinococcus geothermalis DSM 11300 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 373749..384891
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGEO_RS04480 (Dgeo_0367) | - | 373809..374108 (+) | 300 | WP_011529514.1 | hypothetical protein | - |
| DGEO_RS04485 (Dgeo_0368) | - | 374154..374810 (-) | 657 | WP_011529515.1 | PIG-L deacetylase family protein | - |
| DGEO_RS04490 (Dgeo_0369) | - | 374886..375881 (+) | 996 | WP_011529516.1 | GNAT family N-acetyltransferase | - |
| DGEO_RS04495 (Dgeo_0370) | - | 375878..376855 (+) | 978 | WP_011529517.1 | GNAT family N-acetyltransferase | - |
| DGEO_RS04500 (Dgeo_0371) | - | 377061..377759 (+) | 699 | WP_041221519.1 | hypothetical protein | - |
| DGEO_RS04505 (Dgeo_0372) | - | 377827..378372 (+) | 546 | WP_011529519.1 | VUT family protein | - |
| DGEO_RS04510 (Dgeo_0373) | - | 378369..378743 (+) | 375 | WP_011529520.1 | hypothetical protein | - |
| DGEO_RS04515 (Dgeo_0374) | pilD | 378749..379891 (-) | 1143 | WP_011529521.1 | A24 family peptidase | Machinery gene |
| DGEO_RS04520 (Dgeo_0375) | rimO | 379956..381413 (-) | 1458 | WP_011529522.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| DGEO_RS04525 (Dgeo_0376) | minD | 381573..382373 (+) | 801 | WP_011529523.1 | septum site-determining protein MinD | - |
| DGEO_RS04530 (Dgeo_0377) | minE | 382375..382632 (+) | 258 | WP_011529524.1 | cell division topological specificity factor MinE | - |
| DGEO_RS04535 (Dgeo_0378) | - | 382694..383569 (+) | 876 | WP_011529525.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| DGEO_RS04540 (Dgeo_0379) | - | 383648..384592 (+) | 945 | WP_011529526.1 | aldo/keto reductase family protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 39905.27 Da Isoelectric Point: 9.4098
>NTDB_id=25879 DGEO_RS04515 WP_011529521.1 378749..379891(-) (pilD) [Deinococcus geothermalis DSM 11300]
MSLDVLLVVFAGVFGLLVGSFSNVLIHRLPRGENIAFPPSHCPQCNHRLAPRDLVPVGSWLSLGGRCRYCRAPIRVRYPV
VEGLTGLGYALIAALFPLTTFGAGTLGLMLLFTLLLVASVIDLDTFTIPDELTLPGVALGLAFAGWNTRAGAVAAGLPTL
AGALQGALLGAGLLVTIDLLGSWVLRRFRERQYPERPIGYQQISLGLLVGAWLGPWWGLGAALLSAAVNVAARRVVRIPE
LLTLGGFLVSVALGSAGFGPGLILMVQGALAAAGAAALSAGVYWWLRREPLAEEDAPFDPSAMGFGDVKLAAVIGAFLGW
ERLLVAVVVAVFAGALLGLLQVALRRENRVKFGPYLALGAVVALFWGGEIVATYRGILGL
MSLDVLLVVFAGVFGLLVGSFSNVLIHRLPRGENIAFPPSHCPQCNHRLAPRDLVPVGSWLSLGGRCRYCRAPIRVRYPV
VEGLTGLGYALIAALFPLTTFGAGTLGLMLLFTLLLVASVIDLDTFTIPDELTLPGVALGLAFAGWNTRAGAVAAGLPTL
AGALQGALLGAGLLVTIDLLGSWVLRRFRERQYPERPIGYQQISLGLLVGAWLGPWWGLGAALLSAAVNVAARRVVRIPE
LLTLGGFLVSVALGSAGFGPGLILMVQGALAAAGAAALSAGVYWWLRREPLAEEDAPFDPSAMGFGDVKLAAVIGAFLGW
ERLLVAVVVAVFAGALLGLLQVALRRENRVKFGPYLALGAVVALFWGGEIVATYRGILGL
Nucleotide
Download Length: 1143 bp
>NTDB_id=25879 DGEO_RS04515 WP_011529521.1 378749..379891(-) (pilD) [Deinococcus geothermalis DSM 11300]
GTGAGCCTTGACGTTCTGCTCGTGGTCTTCGCCGGCGTGTTTGGGTTGCTGGTGGGGTCGTTTTCGAACGTGCTGATCCA
TCGCCTGCCCCGGGGGGAAAACATTGCTTTTCCGCCCAGCCACTGCCCGCAGTGTAACCATCGCCTCGCGCCGCGCGATC
TGGTGCCGGTGGGCTCGTGGCTGAGCCTGGGGGGCAGATGCCGGTACTGCCGGGCGCCGATCCGAGTGCGCTATCCGGTG
GTCGAAGGGCTGACTGGCTTGGGCTACGCGCTCATCGCTGCGCTGTTTCCCCTCACCACATTCGGGGCAGGCACCCTGGG
CCTGATGCTGCTGTTCACACTGCTGCTGGTGGCGAGTGTGATCGATCTGGACACCTTCACCATTCCCGACGAATTGACGC
TGCCGGGGGTGGCCCTGGGGTTGGCCTTCGCAGGGTGGAACACCCGCGCGGGGGCCGTGGCGGCGGGGCTCCCCACCCTG
GCCGGCGCTCTGCAGGGCGCATTGCTGGGCGCGGGGCTGCTGGTGACCATCGATCTGCTGGGCTCCTGGGTGCTGCGGCG
CTTTCGGGAGCGGCAGTATCCAGAACGACCCATCGGCTACCAGCAGATCAGTCTCGGCCTGCTGGTGGGGGCGTGGCTGG
GGCCGTGGTGGGGGCTGGGGGCGGCCTTGCTGTCGGCTGCTGTGAATGTGGCTGCCCGCCGGGTGGTTCGTATTCCCGAG
TTGCTCACCCTGGGTGGCTTTCTCGTCAGCGTGGCGCTCGGCAGCGCGGGCTTCGGCCCCGGCCTGATTCTGATGGTGCA
GGGGGCGCTGGCCGCAGCAGGCGCAGCGGCGCTGAGCGCAGGGGTCTACTGGTGGCTGCGCCGCGAACCCCTGGCGGAAG
AAGACGCGCCCTTCGACCCTTCTGCGATGGGTTTTGGGGATGTGAAGCTGGCCGCCGTGATCGGGGCCTTCCTGGGCTGG
GAACGGCTGCTGGTCGCCGTTGTGGTGGCGGTGTTTGCGGGCGCGCTGCTCGGCCTCTTACAGGTTGCCCTCAGACGCGA
GAACCGGGTGAAGTTTGGACCATACTTGGCGCTGGGCGCGGTTGTGGCATTGTTCTGGGGCGGGGAGATCGTGGCAACCT
ACCGGGGCATATTGGGCCTCTAA
GTGAGCCTTGACGTTCTGCTCGTGGTCTTCGCCGGCGTGTTTGGGTTGCTGGTGGGGTCGTTTTCGAACGTGCTGATCCA
TCGCCTGCCCCGGGGGGAAAACATTGCTTTTCCGCCCAGCCACTGCCCGCAGTGTAACCATCGCCTCGCGCCGCGCGATC
TGGTGCCGGTGGGCTCGTGGCTGAGCCTGGGGGGCAGATGCCGGTACTGCCGGGCGCCGATCCGAGTGCGCTATCCGGTG
GTCGAAGGGCTGACTGGCTTGGGCTACGCGCTCATCGCTGCGCTGTTTCCCCTCACCACATTCGGGGCAGGCACCCTGGG
CCTGATGCTGCTGTTCACACTGCTGCTGGTGGCGAGTGTGATCGATCTGGACACCTTCACCATTCCCGACGAATTGACGC
TGCCGGGGGTGGCCCTGGGGTTGGCCTTCGCAGGGTGGAACACCCGCGCGGGGGCCGTGGCGGCGGGGCTCCCCACCCTG
GCCGGCGCTCTGCAGGGCGCATTGCTGGGCGCGGGGCTGCTGGTGACCATCGATCTGCTGGGCTCCTGGGTGCTGCGGCG
CTTTCGGGAGCGGCAGTATCCAGAACGACCCATCGGCTACCAGCAGATCAGTCTCGGCCTGCTGGTGGGGGCGTGGCTGG
GGCCGTGGTGGGGGCTGGGGGCGGCCTTGCTGTCGGCTGCTGTGAATGTGGCTGCCCGCCGGGTGGTTCGTATTCCCGAG
TTGCTCACCCTGGGTGGCTTTCTCGTCAGCGTGGCGCTCGGCAGCGCGGGCTTCGGCCCCGGCCTGATTCTGATGGTGCA
GGGGGCGCTGGCCGCAGCAGGCGCAGCGGCGCTGAGCGCAGGGGTCTACTGGTGGCTGCGCCGCGAACCCCTGGCGGAAG
AAGACGCGCCCTTCGACCCTTCTGCGATGGGTTTTGGGGATGTGAAGCTGGCCGCCGTGATCGGGGCCTTCCTGGGCTGG
GAACGGCTGCTGGTCGCCGTTGTGGTGGCGGTGTTTGCGGGCGCGCTGCTCGGCCTCTTACAGGTTGCCCTCAGACGCGA
GAACCGGGTGAAGTTTGGACCATACTTGGCGCTGGGCGCGGTTGTGGCATTGTTCTGGGGCGGGGAGATCGTGGCAACCT
ACCGGGGCATATTGGGCCTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
72.165 |
100 |
0.737 |