Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CWS99_RS00490 Genome accession   NZ_CP025199
Coordinates   132242..134074 (+) Length   610 a.a.
NCBI ID   WP_126015850.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum strain 12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 127242..139074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWS99_RS00470 (CWS99_00485) thiS 127631..127825 (-) 195 WP_126016704.1 sulfur carrier protein ThiS -
  CWS99_RS00475 (CWS99_00490) - 128381..129346 (+) 966 WP_099571134.1 aldo/keto reductase -
  CWS99_RS00480 (CWS99_00495) - 129473..129967 (+) 495 WP_126015846.1 MarR family winged helix-turn-helix transcriptional regulator -
  CWS99_RS00485 (CWS99_00500) - 130273..132135 (+) 1863 Protein_92 ABC transporter ATP-binding protein -
  CWS99_RS00490 (CWS99_00505) rcrQ 132242..134074 (+) 1833 WP_126015850.1 ABC transporter ATP-binding protein Regulator
  CWS99_RS00495 (CWS99_00510) - 134150..135166 (-) 1017 WP_099571129.1 FAD:protein FMN transferase -
  CWS99_RS00500 (CWS99_00515) - 135384..136808 (+) 1425 WP_164519341.1 MFS transporter -
  CWS99_RS00505 (CWS99_00520) - 137200..138963 (+) 1764 WP_164519342.1 FTR1 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66732.38 Da        Isoelectric Point: 6.0998

>NTDB_id=258732 CWS99_RS00490 WP_126015850.1 132242..134074(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain 12]
MPGGPMGRGRRAVEKPQDFGGVMKKLVHFCRHYIPAIIVALVLGAIGTVCQIVGPDKLKDMTNEIAKGLPALVNGKPVLG
AIDMDAVTHIAWLLVALYVGYAVLCYVQSWMMANVTQRTAQELREAISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFVGALIMMFYNNVIMTVCAIVSSLVGLLIMGVIMKVSQKYFSRQQIALGDVNGHVEEMYAGHTVV
KAYCGEADSIRAFEKYNGDLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFGFLEEPEMADESDKQALLGVNGKPVRGDVEFSHVKFGYDPSKTIINDFSASVKSGQKV
AIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDA
CKAVGLHHYIMSLPNGYDTVLDDKATLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFV
IAHRLSTIRDADMILVMNHGDIVESGTHEELLAKGGFYADIYNSQFALTD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=258732 CWS99_RS00490 WP_126015850.1 132242..134074(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain 12]
ATGCCAGGAGGACCTATGGGACGCGGCCGCAGAGCCGTTGAAAAACCGCAGGATTTCGGTGGTGTGATGAAGAAACTGGT
GCATTTCTGCCGCCACTACATTCCCGCCATCATTGTGGCGCTCGTATTGGGCGCGATCGGCACGGTATGCCAGATCGTCG
GTCCGGACAAGCTCAAGGACATGACCAACGAGATCGCCAAAGGCCTGCCTGCGCTAGTCAACGGCAAGCCGGTGCTCGGT
GCGATCGATATGGACGCGGTCACGCACATCGCATGGCTGCTGGTGGCGCTGTATGTGGGGTACGCGGTGCTGTGCTACGT
GCAAAGCTGGATGATGGCGAACGTCACGCAGCGCACCGCACAGGAGCTGCGCGAAGCCATCAGCGTGAAGATCAACAAGC
TGCCGCTCAAGTATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACGTCGGTCACGCTGTTCGTGGGCGCGCTCATCATGATGTTCTACAACAA
TGTGATTATGACGGTGTGCGCCATCGTTTCCAGCCTGGTTGGCCTGCTCATCATGGGTGTGATCATGAAGGTTTCGCAGA
AGTACTTCTCGCGCCAGCAGATCGCGTTGGGTGATGTCAACGGTCACGTCGAAGAGATGTATGCCGGACACACCGTGGTC
AAGGCGTATTGCGGCGAGGCTGATTCGATTCGCGCGTTCGAAAAGTACAACGGCGATTTGTACGATTCGGGATGGAAGAG
CCAGTTCCTTTCCGGCCTGATGATGCCGTTGATGAATTTCGTCGGCAATTTCGGCTACGTGGTTGTGTGCGTGGTTGGCG
CTGTGCTTGCGATGGATGGCAAGATCGAGTTTGGTGTAATCGTTGCGTTCATGATGTACATTCGACTGTTCACCCAGCCG
CTTTCCCAGTTCGCGCAGGCATTCCAGAACCTGCAGCGTTGCGCGGCCGCTTCCGAGCGCGTGTTTGGCTTCCTTGAAGA
GCCGGAGATGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGCGTGAACGGCAAACCGGTGCGCGGTGACGTTGAGTTCA
GTCATGTGAAGTTCGGTTACGATCCGAGCAAGACGATCATCAACGATTTCTCCGCTTCGGTGAAGTCCGGTCAGAAGGTT
GCGATTGTTGGTCCGACCGGTGCCGGCAAGACCACGATGGTGAATCTGCTGATGCGTTTCTATGAGATTTCGGGCGGTTC
GATTGCGATTGATGGTGTGGATACGAAGTCCGTGCCACGCTGGAACGTGCATGACCAGTTCTCCATGGTGTTGCAGGATA
CGTGGGTGTTCCGTGGAACGGTGCGTGAAAACATCGCGTATTCGAAGCCGGGCGTCACTGACAAGCAGATCGAGGACGCA
TGCAAGGCCGTGGGTCTGCATCACTACATCATGTCGCTGCCGAACGGTTATGACACCGTGCTTGACGACAAGGCCACGCT
TTCGCAGGGTCAGAAGCAGTTGCTCACCATTGCGCGAGCCATGGTTGAGGATGCGCCGATTCTGATTCTCGACGAAGCTA
CTTCTTCGGTTGATACGCGTACGGAAGAGCTGATTCAGAAGGCCATGGACGCGCTGACCGTGGATCGCACGTCGTTCGTG
ATTGCGCACCGTCTGTCCACCATCCGCGATGCGGACATGATTTTGGTCATGAACCATGGCGACATTGTGGAAAGCGGCAC
GCATGAGGAGCTGCTCGCCAAAGGCGGTTTCTACGCCGACATCTACAACAGCCAGTTCGCCCTCACCGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-535)

ABC transporter transmembrane region (ABC_membrane)

(38-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.413

96.066

0.513

Multiple sequence alignment