Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CW750_RS06825 | Genome accession | NZ_CP025136 |
| Coordinates | 1384527..1385198 (+) | Length | 223 a.a. |
| NCBI ID | WP_025016328.1 | Uniprot ID | A0AAE8J597 |
| Organism | Latilactobacillus sakei strain WiKim0072 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1379527..1390198
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CW750_RS06805 (CW750_06800) | rny | 1379627..1381192 (+) | 1566 | WP_011374197.1 | ribonuclease Y | - |
| CW750_RS06810 (CW750_06805) | - | 1381348..1382436 (+) | 1089 | WP_035144637.1 | MraY family glycosyltransferase | - |
| CW750_RS06815 (CW750_06810) | - | 1382463..1383128 (-) | 666 | WP_025016329.1 | YigZ family protein | - |
| CW750_RS06820 (CW750_06815) | comFA | 1383190..1384527 (+) | 1338 | WP_052039239.1 | DEAD/DEAH box helicase | Machinery gene |
| CW750_RS06825 (CW750_06820) | comFC | 1384527..1385198 (+) | 672 | WP_025016328.1 | ComF family protein | Machinery gene |
| CW750_RS06830 (CW750_06825) | raiA | 1385325..1385870 (+) | 546 | WP_011374202.1 | ribosome-associated translation inhibitor RaiA | - |
| CW750_RS06835 (CW750_06830) | secA | 1386119..1388482 (+) | 2364 | WP_011374203.1 | preprotein translocase subunit SecA | - |
| CW750_RS06840 (CW750_06835) | prfB | 1388552..1389668 (+) | 1117 | WP_099049013.1 | peptide chain release factor 2 | - |
Sequence
Protein
Download Length: 223 a.a. Molecular weight: 26144.28 Da Isoelectric Point: 9.8835
>NTDB_id=258579 CW750_RS06825 WP_025016328.1 1384527..1385198(+) (comFC) [Latilactobacillus sakei strain WiKim0072]
MCHNLIIEKPSIKQLLQLKPLLNPHICQVCLQQFERISGHRCSDCSRPLLTGILCPDCQQWRQRYPQQHLKTQALFTYNR
AMQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQ
KNRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR
MCHNLIIEKPSIKQLLQLKPLLNPHICQVCLQQFERISGHRCSDCSRPLLTGILCPDCQQWRQRYPQQHLKTQALFTYNR
AMQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQ
KNRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR
Nucleotide
Download Length: 672 bp
>NTDB_id=258579 CW750_RS06825 WP_025016328.1 1384527..1385198(+) (comFC) [Latilactobacillus sakei strain WiKim0072]
ATGTGCCACAATTTAATTATCGAAAAGCCAAGTATCAAGCAACTTTTGCAATTAAAACCACTACTTAATCCGCATATCTG
CCAAGTCTGTTTACAGCAGTTTGAACGCATTAGTGGTCATCGGTGTTCGGACTGTAGTCGACCGCTGCTAACGGGTATTT
TGTGCCCTGATTGTCAGCAGTGGCGACAACGTTATCCTCAGCAGCATCTTAAAACTCAGGCGCTGTTTACTTATAACCGA
GCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAAC
TCGGTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATC
CAGTCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAA
AAAAATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGAT
AATAATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAG
CTACAATTAATGCGATTACTTTAGCCAGATAG
ATGTGCCACAATTTAATTATCGAAAAGCCAAGTATCAAGCAACTTTTGCAATTAAAACCACTACTTAATCCGCATATCTG
CCAAGTCTGTTTACAGCAGTTTGAACGCATTAGTGGTCATCGGTGTTCGGACTGTAGTCGACCGCTGCTAACGGGTATTT
TGTGCCCTGATTGTCAGCAGTGGCGACAACGTTATCCTCAGCAGCATCTTAAAACTCAGGCGCTGTTTACTTATAACCGA
GCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAAC
TCGGTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATC
CAGTCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAA
AAAAATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGAT
AATAATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAG
CTACAATTAATGCGATTACTTTAGCCAGATAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Latilactobacillus sakei subsp. sakei 23K |
97.183 |
63.677 |
0.619 |