Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DOU34_RS02745 Genome accession   NZ_CP030097
Coordinates   555145..556962 (+) Length   605 a.a.
NCBI ID   WP_042634970.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 550145..561962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS02730 - 550930..551691 (+) 762 WP_003155531.1 MurR/RpiR family transcriptional regulator -
  DOU34_RS02735 - 551708..553294 (+) 1587 WP_007408531.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  DOU34_RS02740 - 553431..555164 (+) 1734 WP_007408532.1 ABC transporter ATP-binding protein -
  DOU34_RS02745 rcrQ 555145..556962 (+) 1818 WP_042634970.1 ABC transporter ATP-binding protein Regulator
  DOU34_RS02750 - 557130..557534 (+) 405 WP_007408534.1 DoxX family protein -
  DOU34_RS02755 - 557551..558408 (+) 858 WP_020955517.1 VOC family protein -
  DOU34_RS02765 cyoE 558774..559721 (+) 948 WP_020955518.1 heme o synthase -
  DOU34_RS02770 - 559759..560310 (-) 552 WP_012117104.1 PadR family transcriptional regulator -
  DOU34_RS02775 - 560543..561145 (+) 603 WP_061046512.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67542.29 Da        Isoelectric Point: 9.7083

>NTDB_id=258505 DOU34_RS02745 WP_042634970.1 555145..556962(+) (rcrQ) [Bacillus amyloliquefaciens strain SH-B74]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
QTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTISVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMKQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGEIEFRDVSFGYQEDSPILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDKEVEEAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=258505 DOU34_RS02745 WP_042634970.1 555145..556962(+) (rcrQ) [Bacillus amyloliquefaciens strain SH-B74]
ATGCAAAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTTATCGTCGGA
CAGACGACAGACGGATTGGCGGGGGTGCTGTTCATCCTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACCCATCTGCATGAGCTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGGGACTTAATGAGCCGGGTCACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCTCCGTCATGCTGTACATGAGTCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGATTGC
TGTTTAAACAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGGGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGAAACAATTTTTAGAAAAAAACGCGGCGTTACAATCATCGGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGATGGATTTCTATCGGTTCTATCGTCGTATTCGCCGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTAGCCAATCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGCTGTACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCCGATCTTAAAACACCTGTCCTTCAGCGTTCCGAAAGGACAATCAATCGCCTTTGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCGAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACAATCAGGGAGAATATCCGCTACGGCCGGCTGGATGCTTCTGACAAAGAGGTGGAGGAAGCCGCAAAAGCCGCCAAT
GCCCACGGGTTCATCGAACGGCTCCCGAAAGGCTACGATACCGTTCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTCATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ACACAGTGACCGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCGGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAAAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372