Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DK877_RS05165 Genome accession   NZ_CP030023
Coordinates   1022029..1022868 (+) Length   279 a.a.
NCBI ID   WP_002936004.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2414     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1017029..1027868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK877_RS05135 (DK877_05310) - 1017487..1018365 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  DK877_RS05140 (DK877_05315) atpD 1018385..1019791 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  DK877_RS05145 (DK877_05320) - 1019801..1020217 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  DK877_RS05150 (DK877_05325) - 1020277..1020501 (+) 225 WP_024387485.1 DUF1146 family protein -
  DK877_RS05155 (DK877_05330) murA 1020526..1021815 (+) 1290 WP_024415642.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DK877_RS05160 (DK877_05335) - 1021808..1021999 (+) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  DK877_RS05165 (DK877_05340) endA 1022029..1022868 (+) 840 WP_002936004.1 DNA/RNA non-specific endonuclease Machinery gene
  DK877_RS05170 (DK877_05345) - 1022953..1024209 (-) 1257 WP_053338607.1 ISL3 family transposase -
  DK877_RS05175 (DK877_05350) - 1024478..1026031 (+) 1554 WP_013730405.1 MFS transporter -
  DK877_RS05180 (DK877_05355) - 1026087..1027115 (+) 1029 WP_013730404.1 sugar kinase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30175.36 Da        Isoelectric Point: 6.2370

>NTDB_id=258366 DK877_RS05165 WP_002936004.1 1022029..1022868(+) (endA) [Streptococcus suis strain ISU2414]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=258366 DK877_RS05165 WP_002936004.1 1022029..1022868(+) (endA) [Streptococcus suis strain ISU2414]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTACCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591