Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DK875_RS08965 Genome accession   NZ_CP030020
Coordinates   1807715..1808503 (-) Length   262 a.a.
NCBI ID   WP_002937605.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2514     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1802715..1813503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS08940 (DK875_09315) gatC 1803406..1803708 (-) 303 WP_002939046.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  DK875_RS08945 (DK875_09320) - 1803926..1804600 (-) 675 WP_012774968.1 hydrolase -
  DK875_RS08950 (DK875_09325) rplS 1804786..1805133 (-) 348 WP_011921928.1 50S ribosomal protein L19 -
  DK875_RS08955 (DK875_09330) - 1805691..1806879 (-) 1189 Protein_1762 IS110 family transposase -
  DK875_RS08960 (DK875_09335) - 1807162..1807713 (-) 552 WP_024376330.1 cysteine hydrolase family protein -
  DK875_RS08965 (DK875_09340) codY 1807715..1808503 (-) 789 WP_002937605.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DK875_RS08970 (DK875_09345) - 1808974..1810188 (-) 1215 WP_002937606.1 pyridoxal phosphate-dependent aminotransferase -
  DK875_RS08975 (DK875_09350) - 1810343..1810795 (+) 453 WP_004194294.1 universal stress protein -
  DK875_RS11370 - 1810811..1812176 (-) 1366 Protein_1767 Cof-type HAD-IIB family hydrolase -
  DK875_RS08990 (DK875_09365) - 1812246..1813205 (+) 960 WP_014636805.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29276.33 Da        Isoelectric Point: 4.6797

>NTDB_id=258188 DK875_RS08965 WP_002937605.1 1807715..1808503(-) (codY) [Streptococcus suis strain ISU2514]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELNAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=258188 DK875_RS08965 WP_002937605.1 1807715..1808503(-) (codY) [Streptococcus suis strain ISU2514]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGAATGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

51.626

93.893

0.485

Multiple sequence alignment