Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DK875_RS07795 Genome accession   NZ_CP030020
Coordinates   1572691..1573425 (-) Length   244 a.a.
NCBI ID   WP_002938699.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2514     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567691..1578425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS07765 (DK875_08080) - 1567800..1568627 (-) 828 WP_022540576.1 class C sortase -
  DK875_RS07770 (DK875_08085) - 1568595..1568984 (+) 390 Protein_1522 transposase -
  DK875_RS07775 (DK875_08090) - 1568985..1569371 (-) 387 WP_002938691.1 hypothetical protein -
  DK875_RS07780 (DK875_08095) lepB 1569390..1569992 (-) 603 WP_009909468.1 signal peptidase I -
  DK875_RS07785 (DK875_08100) - 1569982..1570275 (-) 294 WP_002938694.1 hypothetical protein -
  DK875_RS07790 (DK875_08110) - 1571713..1572561 (-) 849 WP_002938697.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  DK875_RS07795 (DK875_08115) amiE 1572691..1573425 (-) 735 WP_002938699.1 amino acid ABC transporter ATP-binding protein Regulator
  DK875_RS07800 (DK875_08120) - 1573418..1574107 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  DK875_RS07805 (DK875_08125) - 1574233..1574463 (-) 231 WP_002938704.1 DUF1797 family protein -
  DK875_RS07810 (DK875_08130) clpE 1574687..1576915 (+) 2229 WP_002938706.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  DK875_RS07815 (DK875_08135) - 1577101..1577562 (+) 462 WP_002938708.1 NUDIX hydrolase -
  DK875_RS07820 (DK875_08140) - 1577617..1577925 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26895.13 Da        Isoelectric Point: 4.7252

>NTDB_id=258178 DK875_RS07795 WP_002938699.1 1572691..1573425(-) (amiE) [Streptococcus suis strain ISU2514]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGIIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=258178 DK875_RS07795 WP_002938699.1 1572691..1573425(-) (amiE) [Streptococcus suis strain ISU2514]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTTGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAACCTTTTTCCAAATATGACGGTATTAGATAACATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTGCTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCGGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTATCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365