Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CWI35_RS04195 Genome accession   NZ_CP025074
Coordinates   804167..804946 (-) Length   259 a.a.
NCBI ID   WP_011230715.1    Uniprot ID   A0A7U9ET86
Organism   [Bacillus] caldolyticus strain NEB414     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 799167..809946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI35_RS04165 (CWI35_04155) fliH 799346..800125 (-) 780 WP_015374408.1 flagellar assembly protein FliH -
  CWI35_RS04170 (CWI35_04160) fliG 800109..801128 (-) 1020 WP_021321703.1 flagellar motor switch protein FliG -
  CWI35_RS04175 (CWI35_04165) fliF 801141..802727 (-) 1587 WP_021321702.1 flagellar basal-body MS-ring/collar protein FliF -
  CWI35_RS04180 (CWI35_04170) fliE 802809..803105 (-) 297 WP_011230718.1 flagellar hook-basal body complex protein FliE -
  CWI35_RS04185 (CWI35_04175) flgC 803125..803517 (-) 393 WP_240432137.1 flagellar basal body rod protein FlgC -
  CWI35_RS04190 (CWI35_04180) flgB 803581..803970 (-) 390 WP_011230716.1 flagellar basal body rod protein FlgB -
  CWI35_RS04195 (CWI35_04185) codY 804167..804946 (-) 780 WP_011230715.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CWI35_RS04200 (CWI35_04190) hslU 804963..806357 (-) 1395 WP_013523393.1 HslU--HslV peptidase ATPase subunit -
  CWI35_RS04205 (CWI35_04195) hslV 806375..806917 (-) 543 WP_011230713.1 ATP-dependent protease subunit HslV -
  CWI35_RS04210 (CWI35_04200) xerC 806941..807843 (-) 903 WP_021321701.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29097.44 Da        Isoelectric Point: 4.7774

>NTDB_id=258010 CWI35_RS04195 WP_011230715.1 804167..804946(-) (codY) [[Bacillus] caldolyticus strain NEB414]
MNLLEKTRKINAMLQKAAGRPVNFKEMAETLCEVIEANVFVVSRRGKLLGFAIKQSIENERMKRMLEERQFPEEYTKNLF
NITETSPNIDINSEYTAFPVENRDLFKTGLTTIVPINGGGERLGTLILSRLDREFDNDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLSELEKLKSS

Nucleotide


Download         Length: 780 bp        

>NTDB_id=258010 CWI35_RS04195 WP_011230715.1 804167..804946(-) (codY) [[Bacillus] caldolyticus strain NEB414]
ATGAACTTGCTAGAGAAAACGCGGAAAATCAACGCCATGTTGCAAAAGGCGGCCGGGCGGCCGGTCAATTTTAAAGAAAT
GGCAGAAACGCTTTGCGAAGTGATTGAAGCCAATGTGTTTGTCGTCAGCCGCCGCGGCAAACTGCTTGGATTCGCCATTA
AACAATCGATTGAAAACGAACGGATGAAGCGAATGCTGGAGGAGCGCCAGTTTCCGGAAGAATACACGAAAAACTTGTTC
AACATTACGGAAACGTCTCCTAATATTGATATTAATAGCGAATATACGGCGTTTCCAGTGGAAAATCGTGACTTGTTCAA
AACCGGCTTGACGACGATTGTTCCGATCAACGGCGGAGGCGAGCGGCTCGGCACGCTCATTTTATCGCGCCTTGACCGCG
AGTTTGACAATGACGATCTCATTTTGGCTGAATACGGTGCGACGGTCGTCGGCATGGAAATTCTGCGTGAAAAGGCGGAA
GAAATTGAAGAGGAAGCGCGCAGCAAGGCGGTCGTGCAAATGGCGATCAGCTCCCTTTCTTACAGCGAGCTTGAGGCGAT
CGAACACATTTTTGAGGAGCTTGACGGAACGGAAGGACTGCTTGTCGCGAGCAAAATCGCCGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCTCTGCGCAAACTAGAAAGCGCCGGCGTGATCGAATCGCGTTCACTCGGCATGAAAGGAACG
TACATTAAAGTATTGAACGACAAGTTTTTAAGCGAACTTGAAAAATTGAAATCGAGCTGA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U9ET86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

86.822

99.614

0.865
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467

Multiple sequence alignment