Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CWD84_RS13225 Genome accession   NZ_CP025001
Coordinates   2592056..2592835 (-) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus siamensis strain SCSIO 05746     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2587056..2597835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS13195 (CWD84_13195) fliH 2587101..2587853 (-) 753 WP_060962793.1 flagellar assembly protein FliH -
  CWD84_RS13200 (CWD84_13200) fliG 2587846..2588862 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CWD84_RS13205 (CWD84_13205) fliF 2588875..2590485 (-) 1611 WP_060962794.1 flagellar basal-body MS-ring/collar protein FliF -
  CWD84_RS13210 (CWD84_13210) fliE 2590531..2590851 (-) 321 WP_060962795.1 flagellar hook-basal body complex protein FliE -
  CWD84_RS13215 (CWD84_13215) flgC 2590862..2591314 (-) 453 WP_016936125.1 flagellar basal body rod protein FlgC -
  CWD84_RS13220 (CWD84_13220) flgB 2591314..2591703 (-) 390 WP_016936126.1 flagellar basal body rod protein FlgB -
  CWD84_RS13225 (CWD84_13225) codY 2592056..2592835 (-) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CWD84_RS13230 (CWD84_13230) hslU 2592873..2594276 (-) 1404 WP_060962796.1 HslU--HslV peptidase ATPase subunit -
  CWD84_RS13235 (CWD84_13235) hslV 2594293..2594838 (-) 546 WP_060962797.1 ATP-dependent protease subunit HslV -
  CWD84_RS13240 (CWD84_13240) xerC 2594854..2595771 (-) 918 WP_060962798.1 tyrosine recombinase XerC -
  CWD84_RS13245 (CWD84_13245) trmFO 2595841..2597148 (-) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=257095 CWD84_RS13225 WP_013352252.1 2592056..2592835(-) (codY) [Bacillus siamensis strain SCSIO 05746]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=257095 CWD84_RS13225 WP_013352252.1 2592056..2592835(-) (codY) [Bacillus siamensis strain SCSIO 05746]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCAGAAACGCTTCGCGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAACCTTTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATATACGGCTTTCCCTGTTGAAAACAGAGACCTGTTCCA
AGCAGGCTTAACGACGATTGTGCCGATTATCGGCGGAGGAGAGCGCCTGGGCACATTGATCCTGTCCCGTCTGCAGGACC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCAGAA
GAGATCGAAGAAGAAGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTTTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTACTTGTGGCAAGTAAGATTGCCGACCGTGTAGGCATTACCC
GTTCAGTCATCGTTAACGCACTGAGAAAGCTCGAAAGCGCCGGCGTTATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment