Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPAG1_RS02170 Genome accession   NC_008086
Coordinates   429319..430494 (-) Length   391 a.a.
NCBI ID   WP_000060235.1    Uniprot ID   -
Organism   Helicobacter pylori HPAG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 424319..435494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAG1_RS02135 - 424645..424959 (+) 315 WP_000868000.1 hypothetical protein -
  HPAG1_RS02140 (HPAG1_0415) - 424937..425704 (+) 768 WP_000602325.1 RNA polymerase sigma factor FliA -
  HPAG1_RS02145 (HPAG1_0416) fliM 425697..426761 (+) 1065 WP_000763575.1 flagellar motor switch protein FliM -
  HPAG1_RS02150 (HPAG1_0417) fliY 426765..427628 (+) 864 WP_001150723.1 flagellar motor switch protein FliY -
  HPAG1_RS02155 (HPAG1_0418) - 427657..428193 (+) 537 WP_000964065.1 YhcH/YjgK/YiaL family protein -
  HPAG1_RS02160 (HPAG1_0419) - 428190..428687 (+) 498 WP_000780260.1 DUF2147 domain-containing protein -
  HPAG1_RS02165 (HPAG1_0420) fur 428707..429159 (-) 453 WP_000824996.1 ferric iron uptake transcriptional regulator -
  HPAG1_RS02170 (HPAG1_0421) rarA 429319..430494 (-) 1176 WP_000060235.1 replication-associated recombination protein A Machinery gene
  HPAG1_RS02175 (HPAG1_0422) - 430491..430862 (-) 372 WP_000332991.1 heat shock protein transcriptional repressor HspR -
  HPAG1_RS02180 (HPAG1_0423) - 430872..431738 (-) 867 WP_000045807.1 DnaJ family protein -
  HPAG1_RS02185 (HPAG1_0424) - 431906..433156 (+) 1251 WP_001199582.1 hypothetical protein -
  HPAG1_RS02190 (HPAG1_0425) - 433164..434000 (-) 837 WP_000555778.1 5'-3' exonuclease -
  HPAG1_RS02195 (HPAG1_0426) - 434256..435152 (-) 897 WP_000697563.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43754.22 Da        Isoelectric Point: 8.0386

>NTDB_id=25708 HPAG1_RS02170 WP_000060235.1 429319..430494(-) (rarA) [Helicobacter pylori HPAG1]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPNAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFTFELTPLNKSDLDKLCDK
ALALLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=25708 HPAG1_RS02170 WP_000060235.1 429319..430494(-) (rarA) [Helicobacter pylori HPAG1]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCAACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTCATTTAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTACTTTTGAATTAACCCCCCTAAATAAGAGCGATTTAGACAAGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACTTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.019

100

0.394

Multiple sequence alignment