Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CWD84_RS06915 Genome accession   NZ_CP025001
Coordinates   1321992..1322744 (+) Length   250 a.a.
NCBI ID   WP_060964642.1    Uniprot ID   A0AAI8HM51
Organism   Bacillus siamensis strain SCSIO 05746     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316992..1327744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS06900 (CWD84_06900) - 1317216..1317407 (-) 192 WP_045926471.1 hypothetical protein -
  CWD84_RS06905 (CWD84_06905) - 1317859..1320501 (+) 2643 WP_060964640.1 valine--tRNA ligase -
  CWD84_RS06910 (CWD84_06910) - 1320560..1321852 (+) 1293 WP_060964641.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  CWD84_RS06915 (CWD84_06915) comC 1321992..1322744 (+) 753 WP_060964642.1 prepilin peptidase Machinery gene
  CWD84_RS06920 (CWD84_06920) - 1322871..1323872 (+) 1002 WP_060964643.1 SPOR domain-containing protein -
  CWD84_RS06925 (CWD84_06925) - 1324016..1324585 (+) 570 WP_060964644.1 Maf family protein -
  CWD84_RS06930 (CWD84_06930) radC 1324617..1325312 (+) 696 WP_016938780.1 RadC family protein -
  CWD84_RS06935 (CWD84_06935) mreB 1325404..1326417 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  CWD84_RS06940 (CWD84_06940) mreC 1326448..1327311 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26875.43 Da        Isoelectric Point: 8.8953

>NTDB_id=257073 CWD84_RS06915 WP_060964642.1 1321992..1322744(+) (comC) [Bacillus siamensis strain SCSIO 05746]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRHCREKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLIALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRIFSPLGSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYFYGEELFA
FYITLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=257073 CWD84_RS06915 WP_060964642.1 1321992..1322744(+) (comC) [Bacillus siamensis strain SCSIO 05746]
GTGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCTTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCTTGCAAAGAGGGAGATGCAGACACTGCCGTGAGAAGCTGTCAGTGATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTGTTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAATCGCGCTGTTATTTTTGTCCCTGCTGAT
GATTGTGACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATTTTTTCTCCGCTGGGTTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAGCTGTTTGGAGTGATCGGACTTGCGCTCGGCGTGAAGCT
TGTCCTTATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGTATGTGCGCCGCAGCGGGAGGCAGGCTTGGTA
AAAAGCAGCCTTTCCCGTTTGCGCCGGCCATCGCAGCCGGGAGCGCTGTAAGTTACTTTTACGGTGAAGAGCTGTTCGCG
TTTTACATCACACTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.258

99.2

0.568

Multiple sequence alignment