Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   CVO91_RS00975 Genome accession   NZ_CP024974
Coordinates   152538..153491 (+) Length   317 a.a.
NCBI ID   WP_100664717.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 146781..155380 152538..153491 within 0


Gene organization within MGE regions


Location: 146781..155380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS00955 (CVO91_00955) - 146781..147911 (+) 1131 WP_100664715.1 ISAs1 family transposase -
  CVO91_RS00960 (CVO91_00960) - 148076..149386 (+) 1311 WP_100664716.1 hypothetical protein -
  CVO91_RS00965 (CVO91_00965) - 149624..150786 (+) 1163 Protein_152 IS630 family transposase -
  CVO91_RS00970 (CVO91_00970) - 150928..152133 (+) 1206 WP_052819543.1 hypothetical protein -
  CVO91_RS00975 (CVO91_00975) comYH 152538..153491 (+) 954 WP_100664717.1 class I SAM-dependent methyltransferase Machinery gene
  CVO91_RS00980 (CVO91_00980) - 153542..154729 (+) 1188 WP_100664718.1 acetate kinase -
  CVO91_RS00985 (CVO91_00985) tnpA 154916..155380 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35802.92 Da        Isoelectric Point: 4.4183

>NTDB_id=256913 CVO91_RS00975 WP_100664717.1 152538..153491(+) (comYH) [Streptococcus suis strain CZ130302]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAE
ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=256913 CVO91_RS00975 WP_100664717.1 152538..153491(+) (comYH) [Streptococcus suis strain CZ130302]
ATGAATTTTGAAAAGATCGAACAGGCTTATGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAACATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCTTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCCATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAG
ATTTCTTTCGCCCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTGCCGATTGG
TTACTATCCAGATGATCAGATTGCTAGCCGTTATCAGGTTGCCAGTCCAAAGGAACATACCTACGCCCACCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCTAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

60.443

99.685

0.603
  comYH Streptococcus mutans UA140

60.127

99.685

0.599

Multiple sequence alignment