Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CV702_RS00725 Genome accession   NZ_CP024954
Coordinates   142975..143763 (+) Length   262 a.a.
NCBI ID   WP_017864005.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain F44     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 137975..148763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV702_RS00700 (CV702_00700) - 138343..139134 (+) 792 WP_010905159.1 DNA/RNA non-specific endonuclease -
  CV702_RS00705 (CV702_00705) - 139299..139508 (+) 210 WP_010905160.1 hypothetical protein -
  CV702_RS00710 (CV702_00710) - 139520..139759 (+) 240 WP_017864003.1 hypothetical protein -
  CV702_RS00715 (CV702_00715) - 139956..141539 (+) 1584 WP_017864004.1 glycosyl transferase -
  CV702_RS00720 (CV702_00720) - 141608..142822 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  CV702_RS00725 (CV702_00725) codY 142975..143763 (+) 789 WP_017864005.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CV702_RS00730 (CV702_00730) gatC 144198..144503 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  CV702_RS00735 (CV702_00735) gatA 144503..145969 (+) 1467 WP_017864006.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  CV702_RS00740 (CV702_00740) gatB 145969..147402 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29142.48 Da        Isoelectric Point: 4.5254

>NTDB_id=256696 CV702_RS00725 WP_017864005.1 142975..143763(+) (codY) [Lactococcus lactis subsp. lactis strain F44]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIINALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=256696 CV702_RS00725 WP_017864005.1 142975..143763(+) (codY) [Lactococcus lactis subsp. lactis strain F44]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCATTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.618

100

0.996
  codY Bacillus subtilis subsp. subtilis str. 168

47.244

96.947

0.458

Multiple sequence alignment