Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CV724_RS07550 Genome accession   NZ_CP024952
Coordinates   1550543..1550824 (-) Length   93 a.a.
NCBI ID   WP_001279601.1    Uniprot ID   A0AB74KP27
Organism   Helicobacter pylori strain B125A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1545543..1555824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV724_RS07530 (CV724_07555) - 1546274..1547614 (-) 1341 WP_001886756.1 COG3014 family protein -
  CV724_RS07540 (CV724_07565) comB4 1547915..1550278 (-) 2364 WP_145727441.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CV724_RS07545 (CV724_07570) comB3 1550280..1550543 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  CV724_RS07550 (CV724_07575) comB2 1550543..1550824 (-) 282 WP_001279601.1 TrbC/VirB2 family protein Machinery gene
  CV724_RS07555 (CV724_07580) - 1550970..1551797 (-) 828 WP_145727442.1 DUF5718 family protein -
  CV724_RS07560 (CV724_07585) - 1551886..1552938 (-) 1053 WP_145727443.1 MnmA/TRMU family protein -
  CV724_RS07565 (CV724_07590) dnaG 1552935..1554614 (-) 1680 WP_145727444.1 DNA primase -
  CV724_RS07575 (CV724_07600) groES 1554901..1555257 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10583.82 Da        Isoelectric Point: 8.0163

>NTDB_id=256672 CV724_RS07550 WP_001279601.1 1550543..1550824(-) (comB2) [Helicobacter pylori strain B125A]
MSDHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=256672 CV724_RS07550 WP_001279601.1 1550543..1550824(-) (comB2) [Helicobacter pylori strain B125A]
ATGTCCGATCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGTTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment