Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   CV724_RS05090 Genome accession   NZ_CP024952
Coordinates   1053495..1053758 (+) Length   87 a.a.
NCBI ID   WP_108297661.1    Uniprot ID   -
Organism   Helicobacter pylori strain B125A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1048495..1058758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV724_RS05050 (CV724_05065) - 1048598..1049350 (-) 753 WP_145727180.1 restriction endonuclease -
  CV724_RS05055 (CV724_05070) - 1049352..1050398 (-) 1047 WP_145727181.1 DNA cytosine methyltransferase -
  CV724_RS05060 (CV724_05075) - 1050494..1051117 (-) 624 Protein_964 GIY-YIG nuclease family protein -
  CV724_RS05065 (CV724_05080) - 1051120..1051733 (-) 614 Protein_965 DNA adenine methylase -
  CV724_RS05070 (CV724_05085) - 1051711..1052499 (+) 789 WP_120863285.1 integrase -
  CV724_RS05075 (CV724_05090) - 1052502..1052732 (+) 231 WP_000189076.1 hypothetical protein -
  CV724_RS05080 (CV724_05095) - 1052725..1053222 (+) 498 WP_000571129.1 hypothetical protein -
  CV724_RS05085 (CV724_05100) - 1053200..1053483 (+) 284 Protein_969 TrbC/VirB2 family protein -
  CV724_RS05090 (CV724_05105) comB3 1053495..1053758 (+) 264 WP_108297661.1 competence protein ComB Machinery gene
  CV724_RS05095 (CV724_05110) - 1053769..1054005 (+) 237 WP_108297663.1 hypothetical protein -
  CV724_RS05100 (CV724_05115) - 1054005..1056581 (+) 2577 WP_145727182.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  CV724_RS08300 (CV724_05120) - 1056578..1056718 (+) 141 WP_000789929.1 hypothetical protein -
  CV724_RS05110 (CV724_05125) - 1056711..1057847 (+) 1137 WP_000067684.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9997.83 Da        Isoelectric Point: 4.8778

>NTDB_id=256660 CV724_RS05090 WP_108297661.1 1053495..1053758(+) (comB3) [Helicobacter pylori strain B125A]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYMCFLLTFSIAEFFDEDISDILIANSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=256660 CV724_RS05090 WP_108297661.1 1053495..1053758(+) (comB3) [Helicobacter pylori strain B125A]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATATGTGCT
TTCTCTTAACTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCAATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

62.069

100

0.621

Multiple sequence alignment