Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CV725_RS07715 Genome accession   NZ_CP024951
Coordinates   1579259..1579540 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori B128     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574259..1584540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV725_RS07695 (CV725_07715) - 1574978..1576318 (-) 1341 WP_001879388.1 COG3014 family protein -
  CV725_RS07705 (CV725_07725) comB4 1576631..1578994 (-) 2364 WP_104929328.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CV725_RS07710 (CV725_07730) comB3 1578996..1579259 (-) 264 WP_000584958.1 hypothetical protein Machinery gene
  CV725_RS07715 (CV725_07735) comB2 1579259..1579540 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  CV725_RS07720 (CV725_07740) - 1579685..1580512 (-) 828 WP_001154960.1 DUF5718 family protein -
  CV725_RS07725 (CV725_07745) - 1580602..1581654 (-) 1053 WP_000721172.1 MnmA/TRMU family protein -
  CV725_RS07730 (CV725_07750) dnaG 1581651..1583330 (-) 1680 WP_000601628.1 DNA primase -
  CV725_RS07740 (CV725_07760) groES 1583616..1583972 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=256652 CV725_RS07715 WP_001272686.1 1579259..1579540(-) (comB2) [Helicobacter pylori B128]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=256652 CV725_RS07715 WP_001272686.1 1579259..1579540(-) (comB2) [Helicobacter pylori B128]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment