Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CV727_RS07615 Genome accession   NZ_CP024949
Coordinates   1545201..1545482 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain B136A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540201..1550482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV727_RS07595 (CV727_07590) - 1540928..1542268 (-) 1341 WP_194151516.1 hypothetical protein -
  CV727_RS07605 (CV727_07600) comB4 1542573..1544936 (-) 2364 WP_145821336.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CV727_RS07610 (CV727_07605) comB3 1544938..1545201 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  CV727_RS07615 (CV727_07610) comB2 1545201..1545482 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  CV727_RS07620 (CV727_07615) - 1545628..1546455 (-) 828 WP_145821337.1 DUF5718 family protein -
  CV727_RS07625 (CV727_07620) - 1546548..1547600 (-) 1053 WP_145821339.1 MnmA/TRMU family protein -
  CV727_RS07630 (CV727_07625) dnaG 1547597..1549276 (-) 1680 WP_145821341.1 DNA primase -
  CV727_RS07640 (CV727_07635) groES 1549564..1549920 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=256609 CV727_RS07615 WP_001272686.1 1545201..1545482(-) (comB2) [Helicobacter pylori strain B136A]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=256609 CV727_RS07615 WP_001272686.1 1545201..1545482(-) (comB2) [Helicobacter pylori strain B136A]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment