Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CV727_RS03970 Genome accession   NZ_CP024949
Coordinates   827803..828087 (-) Length   94 a.a.
NCBI ID   WP_000413637.1    Uniprot ID   A0AB72ZV75
Organism   Helicobacter pylori strain B136A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 822803..833087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV727_RS03945 (CV727_03945) - 823438..824574 (-) 1137 WP_145820481.1 VirB8/TrbF family protein -
  CV727_RS08520 (CV727_03950) - 824567..824707 (-) 141 WP_145820483.1 type IV secretion system protein VirB7 -
  CV727_RS03955 (CV727_03955) - 824704..827280 (-) 2577 WP_145820485.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  CV727_RS03960 (CV727_03960) - 827280..827516 (-) 237 WP_001168532.1 hypothetical protein -
  CV727_RS03965 (CV727_03965) comB3 827528..827791 (-) 264 WP_145820487.1 competence protein ComB Machinery gene
  CV727_RS03970 (CV727_03970) comB2 827803..828087 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  CV727_RS03975 (CV727_03975) - 828075..828563 (-) 489 WP_145820489.1 hypothetical protein -
  CV727_RS03980 (CV727_03980) - 828556..828768 (-) 213 WP_227986187.1 hypothetical protein -
  CV727_RS03985 (CV727_03985) - 828789..829577 (-) 789 WP_145820490.1 integrase -
  CV727_RS08690 (CV727_03990) - 829632..829913 (+) 282 Protein_749 glycosyltransferase family 25 protein -
  CV727_RS03995 (CV727_03995) - 829855..830651 (+) 797 Protein_750 glycosyltransferase family 25 protein -
  CV727_RS04000 (CV727_04000) ppa 830707..831228 (+) 522 WP_120975797.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10753.05 Da        Isoelectric Point: 10.7837

>NTDB_id=256595 CV727_RS03970 WP_000413637.1 827803..828087(-) (comB2) [Helicobacter pylori strain B136A]
MEKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=256595 CV727_RS03970 WP_000413637.1 827803..828087(-) (comB2) [Helicobacter pylori strain B136A]
ATGGAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment