Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   CV728_RS07800 Genome accession   NZ_CP024948
Coordinates   1602091..1602354 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain B140     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597091..1607354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV728_RS07785 (CV728_07805) - 1598084..1599424 (-) 1341 WP_194151435.1 COG3014 family protein -
  CV728_RS07795 (CV728_07815) comB4 1599726..1602089 (-) 2364 WP_145818085.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CV728_RS07800 (CV728_07820) comB3 1602091..1602354 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  CV728_RS07805 (CV728_07825) comB2 1602354..1602635 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  CV728_RS07810 (CV728_07830) - 1602781..1603608 (-) 828 WP_145818086.1 DUF5718 family protein -
  CV728_RS07815 (CV728_07835) - 1603701..1604753 (-) 1053 WP_145818087.1 MnmA/TRMU family protein -
  CV728_RS07820 (CV728_07840) dnaG 1604750..1606429 (-) 1680 WP_145818089.1 DNA primase -
  CV728_RS07830 (CV728_07850) groES 1606715..1607071 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=256587 CV728_RS07800 WP_000584956.1 1602091..1602354(-) (comB3) [Helicobacter pylori strain B140]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=256587 CV728_RS07800 WP_000584956.1 1602091..1602354(-) (comB3) [Helicobacter pylori strain B140]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment