Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CV728_RS06495 Genome accession   NZ_CP024948
Coordinates   1339224..1339514 (-) Length   96 a.a.
NCBI ID   WP_000661512.1    Uniprot ID   -
Organism   Helicobacter pylori strain B140     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334224..1344514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV728_RS06470 (CV728_06480) - 1334859..1336025 (-) 1167 WP_000067672.1 VirB8/TrbF family protein -
  CV728_RS08730 (CV728_06485) - 1336018..1336152 (-) 135 WP_000723782.1 hypothetical protein -
  CV728_RS06480 (CV728_06490) - 1336154..1338718 (-) 2565 WP_001923832.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  CV728_RS06485 (CV728_06495) - 1338718..1338939 (-) 222 WP_001170056.1 hypothetical protein -
  CV728_RS06490 (CV728_06500) comB3 1338951..1339214 (-) 264 WP_001177721.1 hypothetical protein Machinery gene
  CV728_RS06495 (CV728_06505) comB2 1339224..1339514 (-) 291 WP_000661512.1 TrbC/VirB2 family protein Machinery gene
  CV728_RS06500 (CV728_06510) - 1339511..1339990 (-) 480 WP_026938141.1 hypothetical protein -
  CV728_RS06505 (CV728_06515) - 1339987..1340211 (-) 225 WP_000188957.1 hypothetical protein -
  CV728_RS06510 (CV728_06520) - 1340214..1341002 (-) 789 WP_194151425.1 integrase -
  CV728_RS06515 (CV728_06525) hofA 1341070..1342422 (-) 1353 WP_145818302.1 outer membrane beta-barrel protein HofA -
  CV728_RS06525 (CV728_06535) - 1342581..1343747 (+) 1167 WP_145817799.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 11002.26 Da        Isoelectric Point: 10.7837

>NTDB_id=256577 CV728_RS06495 WP_000661512.1 1339224..1339514(-) (comB2) [Helicobacter pylori strain B140]
MKELRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPNLAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=256577 CV728_RS06495 WP_000661512.1 1339224..1339514(-) (comB2) [Helicobacter pylori strain B140]
ATGAAAGAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAGCAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTAGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAAACTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542

Multiple sequence alignment