Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CVD07_RS08065 Genome accession   NZ_CP024897
Coordinates   1595221..1596000 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain CN026     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590221..1601000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVD07_RS08045 (CVD07_08070) trmFO 1590908..1592215 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CVD07_RS08050 (CVD07_08075) xerC 1592285..1593202 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  CVD07_RS08055 (CVD07_08080) hslV 1593218..1593763 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  CVD07_RS08060 (CVD07_08085) hslU 1593771..1595183 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  CVD07_RS08065 (CVD07_08090) codY 1595221..1596000 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CVD07_RS08070 (CVD07_08095) flgB 1596354..1596743 (+) 390 WP_100261777.1 flagellar basal body rod protein FlgB -
  CVD07_RS08075 (CVD07_08100) flgC 1596743..1597195 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  CVD07_RS08080 (CVD07_08105) fliE 1597206..1597526 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CVD07_RS08085 (CVD07_08110) fliF 1597569..1599179 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  CVD07_RS08090 (CVD07_08115) fliG 1599192..1600208 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CVD07_RS08095 (CVD07_08120) fliH 1600201..1600956 (+) 756 WP_061861457.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=256243 CVD07_RS08065 WP_003154263.1 1595221..1596000(+) (codY) [Bacillus velezensis strain CN026]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=256243 CVD07_RS08065 WP_003154263.1 1595221..1596000(+) (codY) [Bacillus velezensis strain CN026]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTTAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment