Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM346_RS11855 Genome accession   NZ_CP024889
Coordinates   2199983..2200612 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2194983..2205612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM346_RS11840 (AM346_11820) helD 2195225..2197279 (-) 2055 WP_001297106.1 DNA helicase IV -
  AM346_RS11845 (AM346_11825) yccF 2197402..2197848 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AM346_RS11850 (AM346_11830) yccS 2197858..2200020 (+) 2163 WP_000875015.1 YccS family putative transporter -
  AM346_RS11855 (AM346_11835) sxy/tfoX 2199983..2200612 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM346_RS11860 (AM346_11840) sulA 2200831..2201340 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM346_RS11870 (AM346_11850) ompA 2201697..2202749 (+) 1053 WP_000750419.1 porin OmpA -
  AM346_RS11875 (AM346_11855) matP 2202825..2203277 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM346_RS11880 (AM346_11860) ycbZ 2203463..2205223 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=256190 AM346_RS11855 WP_000839153.1 2199983..2200612(-) (sxy/tfoX) [Escherichia coli strain AR_0019]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=256190 AM346_RS11855 WP_000839153.1 2199983..2200612(-) (sxy/tfoX) [Escherichia coli strain AR_0019]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment