Detailed information NTG0256021

Bioinformatically predicted

Overview

• Name: pilP
• Type: Machinery gene
• Locus tag: VCA1552_RS12110
• Genome accession: NZ_CP024867
• Coordinates: 2579024..2579542 (-)
• Length: 172 a.a.
• NCBI ID: WP_000792032.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain A1552
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2574024..2584542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCA1552_RS12095 (VCA1552_02383)	aroB	2575459..2576544 (-)	1086	WP_000439805.1	3-dehydroquinate synthase	-
VCA1552_RS12100 (VCA1552_02384)	aroK	2576572..2577096 (-)	525	WP_000818616.1	shikimate kinase AroK	-
VCA1552_RS12105 (VCA1552_02385)	pilQ	2577283..2578998 (-)	1716	WP_000788426.1	type IV pilus secretin PilQ family protein	Machinery gene
VCA1552_RS12110 (VCA1552_02386)	pilP	2579024..2579542 (-)	519	WP_000792032.1	pilus assembly protein PilP	Machinery gene
VCA1552_RS12115 (VCA1552_02387)	pilO	2579532..2580122 (-)	591	WP_000157690.1	type 4a pilus biogenesis protein PilO	Machinery gene
VCA1552_RS12120 (VCA1552_02388)	pilN	2580115..2580699 (-)	585	WP_000902745.1	PilN domain-containing protein	Machinery gene
VCA1552_RS12125 (VCA1552_02389)	pilM	2580689..2581705 (-)	1017	WP_000520444.1	type IV pilus assembly protein PilM	Machinery gene
VCA1552_RS12130 (VCA1552_02390)	-	2581848..2584325 (+)	2478	WP_000668733.1	penicillin-binding protein 1A	-

Sequence

Protein

• Length: 172 a.a.
• Molecular weight: 19084.25 Da
• Isoelectric Point: 10.0857

>NTDB_id=256021 VCA1552_RS12110 WP_000792032.1 2579024..2579542(-) (pilP) [Vibrio cholerae strain A1552]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide

• Length: 519 bp

>NTDB_id=256021 VCA1552_RS12110 WP_000792032.1 2579024..2579542(-) (pilP) [Vibrio cholerae strain A1552]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

• Pilus assembly protein, PilP (PilP) (25-171)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilP	Vibrio cholerae strain A1552	100	100	1
pilP	Vibrio campbellii strain DS40M4	56.395	100	0.564