Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   CTW00_RS08655 Genome accession   NZ_CP024843
Coordinates   1789550..1790413 (-) Length   287 a.a.
NCBI ID   WP_100185193.1    Uniprot ID   -
Organism   Streptococcus iniae strain FP5228     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1784550..1795413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTW00_RS08635 (CTW00_01754) - 1784804..1785184 (-) 381 WP_003099988.1 OsmC family protein -
  CTW00_RS08640 (CTW00_01755) pheT 1785257..1787662 (-) 2406 WP_003099989.1 phenylalanine--tRNA ligase subunit beta -
  CTW00_RS08645 (CTW00_01756) - 1787678..1788202 (-) 525 WP_003099991.1 N-acetyltransferase -
  CTW00_RS08650 (CTW00_01757) pheS 1788215..1789258 (-) 1044 WP_003099992.1 phenylalanine--tRNA ligase subunit alpha -
  CTW00_RS08655 (CTW00_01758) endA 1789550..1790413 (-) 864 WP_100185193.1 DNA/RNA non-specific endonuclease Machinery gene
  CTW00_RS08660 (CTW00_01759) - 1790444..1790632 (-) 189 WP_003099995.1 DNA-directed RNA polymerase subunit beta -
  CTW00_RS08665 (CTW00_01760) murA 1790636..1791907 (-) 1272 WP_003099997.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CTW00_RS08670 - 1791973..1792209 (-) 237 WP_100185194.1 DUF1146 family protein -
  CTW00_RS08675 (CTW00_01761) - 1792285..1792701 (-) 417 WP_003100001.1 F0F1 ATP synthase subunit epsilon -
  CTW00_RS08680 (CTW00_01762) atpD 1792714..1794120 (-) 1407 WP_003100002.1 F0F1 ATP synthase subunit beta -
  CTW00_RS08685 (CTW00_01763) - 1794236..1795111 (-) 876 WP_003100004.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31657.32 Da        Isoelectric Point: 9.5318

>NTDB_id=255830 CTW00_RS08655 WP_100185193.1 1789550..1790413(-) (endA) [Streptococcus iniae strain FP5228]
MSPKTKQSQKINLLLFLLVLVGLFYLIDSKEGEENNPIRAFYQSVMGASNQTSQKESSNPDTPSYALASSVLTEKVKRQL
GSKVEWNGNGAFVINDNSTNLDAKVSSAPYAHNQTRLLSGKKLPTVANALLAKSTRQYRDRNETGNGYSYWKPAGWHQIH
GLSGKYDHAVDRGHLLGYALVGGLKGFDASTSNSDNIATQLSWANQAMDSDSTGQNYYATKIRRALDKNKRVRYRVTLIY
EADNILASGSHLEAKSDDGSLEFNVFVPNVQKGLEVDYQTGQITVSH

Nucleotide


Download         Length: 864 bp        

>NTDB_id=255830 CTW00_RS08655 WP_100185193.1 1789550..1790413(-) (endA) [Streptococcus iniae strain FP5228]
ATGTCACCAAAGACAAAACAAAGTCAAAAAATCAATCTATTATTGTTTCTGCTTGTGCTCGTTGGCTTATTCTATTTGAT
TGATAGTAAAGAAGGGGAAGAGAATAATCCTATTCGAGCCTTTTATCAATCAGTGATGGGAGCTTCCAATCAAACTAGCC
AAAAAGAATCAAGCAATCCTGATACACCAAGTTATGCCTTGGCATCTTCGGTTTTAACAGAAAAAGTAAAAAGACAACTT
GGTTCGAAAGTTGAGTGGAATGGTAATGGTGCATTTGTCATCAATGATAACAGTACCAATTTGGATGCAAAAGTATCCAG
TGCTCCCTATGCTCACAATCAAACCAGACTCTTATCAGGGAAAAAGCTTCCAACAGTCGCCAATGCTTTACTTGCCAAAT
CAACAAGGCAATACCGAGACCGAAACGAGACCGGAAATGGCTACTCTTATTGGAAACCTGCTGGTTGGCACCAGATTCAT
GGTTTATCAGGAAAATATGATCACGCTGTGGACCGTGGGCATTTATTAGGCTATGCTTTAGTGGGAGGTCTTAAAGGATT
TGATGCCTCTACAAGCAATAGCGATAACATAGCAACGCAATTATCCTGGGCTAACCAAGCGATGGATAGTGATTCCACTG
GCCAAAATTATTATGCAACAAAAATCAGACGTGCATTGGACAAGAATAAGCGTGTCCGTTACCGTGTTACCCTCATTTAC
GAGGCTGATAATATATTAGCAAGTGGAAGCCATTTAGAAGCAAAATCAGATGACGGCAGTTTAGAATTTAACGTTTTTGT
GCCAAATGTTCAAAAAGGTCTAGAAGTTGACTATCAAACAGGACAAATAACAGTCAGTCACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.136

82.23

0.519
  endA Streptococcus pneumoniae D39

63.136

82.23

0.519
  endA Streptococcus pneumoniae R6

63.136

82.23

0.519
  endA Streptococcus pneumoniae TIGR4

63.136

82.23

0.519

Multiple sequence alignment