Detailed information NTG0255797

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: CTW00_RS01475
• Genome accession: NZ_CP024843
• Coordinates: 302119..303054 (-)
• Length: 311 a.a.
• NCBI ID: WP_003102190.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain FP5228
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 297119..308054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CTW00_RS01445 (CTW00_00291)	rpsN	297236..297505 (+)	270	WP_003102179.1	30S ribosomal protein S14	-
CTW00_RS01450 (CTW00_00292)	tsaD	297702..298721 (-)	1020	WP_003102180.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
CTW00_RS01455 (CTW00_00293)	rimI	298711..299136 (-)	426	WP_003102181.1	ribosomal protein S18-alanine N-acetyltransferase	-
CTW00_RS01460 (CTW00_00294)	tsaB	299138..299830 (-)	693	WP_003102183.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
CTW00_RS01465 (CTW00_00295)	-	300116..300346 (+)	231	WP_003102185.1	DNA-dependent RNA polymerase subunit epsilon	-
CTW00_RS01470 (CTW00_00296)	-	300348..302030 (+)	1683	WP_003102188.1	ribonuclease J	-
CTW00_RS01475 (CTW00_00297)	amiF	302119..303054 (-)	936	WP_003102190.1	ATP-binding cassette domain-containing protein	Regulator
CTW00_RS01480 (CTW00_00298)	oppD	303054..304100 (-)	1047	WP_003102192.1	ABC transporter ATP-binding protein	Regulator
CTW00_RS01485 (CTW00_00299)	-	304113..305144 (-)	1032	WP_003102195.1	ABC transporter permease	-
CTW00_RS01490 (CTW00_00300)	-	305154..306068 (-)	915	WP_003102198.1	ABC transporter permease	-
CTW00_RS01495 (CTW00_00301)	-	306143..307798 (-)	1656	WP_003102201.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35198.16 Da
• Isoelectric Point: 6.4061

>NTDB_id=255797 CTW00_RS01475 WP_003102190.1 302119..303054(-) (amiF) [Streptococcus iniae strain FP5228]
MTAERKKLVELKNVSLSFNKGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDITDGEIIFNDKEVSQL
KGRDLRDFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLAKDKESREAKVQELLDLVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQRLQAEKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGSSDD
VYNNPIHPYTRSLLSAIPEPDPDKERQRVAEIYDSSIELDGQEREMREITPNHFVLSTEEEAAQYRLNLKK

Nucleotide

• Length: 936 bp

>NTDB_id=255797 CTW00_RS01475 WP_003102190.1 302119..303054(-) (amiF) [Streptococcus iniae strain FP5228]
ATGACTGCCGAACGTAAAAAATTAGTTGAGCTAAAAAATGTCTCTTTGTCCTTTAACAAAGGCAAAAAAAATGAAGTAAA
AGCTATTAATAATGTCAGCTTTGATATTTATGAAGGCGAAGTTTTTGGACTTGTTGGTGAATCTGGTTCAGGGAAAACCA
CTGTTGGTCGTGCCATTCTAAAACTTTATGATATTACTGATGGTGAAATCATCTTTAATGATAAAGAGGTATCTCAATTA
AAAGGACGTGATTTACGAGATTTCCGCAAAGATGCACAAATGATTTTCCAAGACCCACAAGCCAGTCTTAATGGTCGTAT
GAAAATTAGAGACATTGTTGCTGAAGGTCTCGACATTCATGGTTTAGCTAAAGATAAAGAAAGCCGTGAGGCTAAAGTTC
AAGAATTACTTGACCTTGTTGGTTTAAACAAAGACCATGTGACACGTTACCCACATGAGTTCTCTGGTGGACAACGTCAG
CGTATTGGGATTGCACGGGCCTTGGCTGTTAAACCTAAATTTATCATTGCAGATGAGCCAATCTCAGCTTTAGATGTATC
TATTCAAGCCCAAGTTGTGAATTTGATGCAAAGATTGCAAGCTGAAAAAGGACTGACTTACCTTTTCATTGCCCATGATT
TGTCGATGGTTAAATACATTTCAGATCGTATCGGTGTTATGCACTGGGGAAAAATGTTGGAAATTGGTAGTTCCGATGAC
GTTTACAATAATCCAATCCATCCTTACACAAGAAGTCTCTTATCAGCAATTCCAGAACCAGATCCTGATAAGGAACGTCA
ACGTGTTGCTGAAATCTATGACTCAAGTATAGAATTAGATGGACAAGAAAGAGAGATGCGTGAAATTACACCAAATCACT
TTGTTCTTTCAACTGAAGAAGAAGCTGCTCAATACAGGCTAAATCTTAAAAAATAA

Domains

Predicted by InterProScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.785	97.428	0.534
amiF	Streptococcus thermophilus LMG 18311	54.455	97.428	0.531
amiF	Streptococcus salivarius strain HSISS4	54.125	97.428	0.527