Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CUB85_RS08825 Genome accession   NZ_CP024797
Coordinates   1704060..1704839 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain TJ02     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699060..1709839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUB85_RS08805 trmFO 1699747..1701054 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CUB85_RS08810 xerC 1701124..1702041 (+) 918 WP_032871470.1 tyrosine recombinase XerC -
  CUB85_RS08815 hslV 1702057..1702602 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  CUB85_RS08820 hslU 1702619..1704022 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  CUB85_RS08825 codY 1704060..1704839 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CUB85_RS08830 flgB 1705193..1705582 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  CUB85_RS08835 flgC 1705582..1706034 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  CUB85_RS08840 fliE 1706045..1706365 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CUB85_RS08845 fliF 1706408..1708018 (+) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  CUB85_RS08850 fliG 1708031..1709047 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CUB85_RS08855 fliH 1709040..1709795 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=255495 CUB85_RS08825 WP_003154263.1 1704060..1704839(+) (codY) [Bacillus velezensis strain TJ02]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=255495 CUB85_RS08825 WP_003154263.1 1704060..1704839(+) (codY) [Bacillus velezensis strain TJ02]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment