Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   COO91_RS38675 Genome accession   NZ_CP024785
Coordinates   8283772..8284878 (-) Length   368 a.a.
NCBI ID   WP_100903270.1    Uniprot ID   -
Organism   Nostoc flagelliforme CCNUN1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8278772..8289878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO91_RS38655 (COO91_08994) - 8278855..8279430 (-) 576 WP_100902725.1 Uma2 family endonuclease -
  COO91_RS38660 (COO91_08996) - 8279660..8282035 (-) 2376 WP_100902726.1 type IV pilus secretin family protein -
  COO91_RS38665 (COO91_08997) - 8282224..8282994 (-) 771 WP_100902727.1 pilus assembly protein PilO -
  COO91_RS38670 (COO91_08998) - 8282991..8283767 (-) 777 WP_100902728.1 PilN domain-containing protein -
  COO91_RS38675 (COO91_08999) pilM 8283772..8284878 (-) 1107 WP_100903270.1 type IV pilus assembly protein PilM Machinery gene
  COO91_RS38680 (COO91_09000) - 8285097..8286401 (+) 1305 WP_100902729.1 sugar ABC transporter substrate-binding protein -
  COO91_RS38685 (COO91_09001) - 8286552..8287562 (+) 1011 WP_100902730.1 hypothetical protein -
  COO91_RS38690 (COO91_09002) - 8288229..8289530 (-) 1302 WP_100902731.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  COO91_RS38695 (COO91_09004) - 8289703..8289828 (-) 126 WP_012411301.1 photosystem II protein Y -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40415.46 Da        Isoelectric Point: 4.5259

>NTDB_id=255427 COO91_RS38675 WP_100903270.1 8283772..8284878(-) (pilM) [Nostoc flagelliforme CCNUN1]
MVKSFKSLFGKSKKGVGIELAPERVNVVQLRKQGQGLKLETFTSVAVPEGVVIDGQITDPAAMAQLIQQALTESKIKTSR
VATGVPGRDSIVRIIPVPAELDDKELREMVLNHEAGLYLPYPREEADVDYQKLGYFQDEDGIEKVHVLLVATRKEITDTY
ISTFEQAGLQIDVLEINSFALIRTIREQLRQFGPQEAAVLVDIEFDSTEIAIIVNGVPQFSRTVPIGTYQMQTALARAMS
LPTSRDMELLHGMVIPQTSLDGGKTGVTEINPGMAAILRVLGELTDELRRSIDFYLNQSENLEVAQIILAGPGGGLQQLD
EFFTQRLSLPTTQIDPIVALSLAVDTDKYPQVERSGLAIVLGLGMREV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=255427 COO91_RS38675 WP_100903270.1 8283772..8284878(-) (pilM) [Nostoc flagelliforme CCNUN1]
GTGGTAAAAAGCTTCAAAAGTCTGTTTGGCAAATCAAAAAAAGGGGTCGGCATTGAACTTGCTCCCGAAAGGGTGAATGT
AGTTCAGCTACGCAAGCAGGGTCAAGGCTTGAAGCTAGAAACCTTTACATCGGTAGCAGTTCCAGAAGGCGTAGTTATCG
ATGGTCAAATCACCGACCCCGCAGCAATGGCGCAATTAATCCAGCAGGCGCTAACTGAGAGCAAAATCAAAACTTCTCGC
GTTGCCACTGGTGTACCAGGGCGAGATTCCATCGTTCGGATCATACCAGTGCCAGCAGAGTTAGATGATAAAGAACTGCG
AGAAATGGTTCTCAACCATGAAGCAGGTTTGTATTTACCCTATCCTCGTGAAGAGGCTGATGTAGATTATCAGAAACTTG
GGTACTTTCAAGATGAGGATGGCATTGAAAAAGTACACGTACTTCTAGTAGCCACCCGTAAGGAGATAACGGATACCTAT
ATAAGTACATTCGAGCAGGCAGGATTACAAATCGATGTTTTAGAAATTAACAGTTTTGCTCTAATTCGGACTATTCGTGA
GCAATTGCGACAATTTGGGCCGCAAGAAGCAGCAGTACTAGTTGATATAGAGTTCGACAGTACAGAAATCGCCATCATCG
TTAACGGAGTGCCACAATTTTCACGCACAGTCCCAATCGGGACTTATCAAATGCAAACTGCCTTAGCAAGGGCAATGAGC
TTACCCACATCACGAGATATGGAACTGTTACACGGAATGGTGATTCCCCAAACTTCTTTAGACGGCGGGAAAACTGGGGT
TACTGAAATCAATCCTGGTATGGCAGCCATATTAAGAGTATTGGGAGAACTAACTGATGAACTGCGCCGTTCCATCGATT
TTTACCTCAATCAAAGTGAAAATTTGGAGGTAGCGCAGATTATATTAGCTGGCCCAGGAGGTGGACTCCAACAGCTAGAT
GAATTCTTTACCCAACGATTGAGCTTGCCAACTACCCAAATAGATCCAATCGTAGCTCTGTCTTTGGCAGTTGACACTGA
TAAATATCCACAGGTGGAACGCTCTGGCTTGGCGATCGTACTTGGTCTAGGAATGCGGGAGGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(283-367)

Type IV pilus assembly protein PilM; (PilM_2)

(17-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

68.207

100

0.682

Multiple sequence alignment