Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DMB38_RS14395 Genome accession   NZ_CP029618
Coordinates   3375404..3377242 (-) Length   612 a.a.
NCBI ID   WP_125935524.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3370404..3382242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS14370 (DMB38_14370) - 3370453..3371199 (-) 747 WP_125935520.1 response regulator transcription factor -
  DMB38_RS14375 (DMB38_14375) - 3371204..3372232 (-) 1029 WP_240662224.1 trypsin-like peptidase domain-containing protein -
  DMB38_RS14380 (DMB38_14380) - 3372347..3373363 (-) 1017 WP_125935521.1 LacI family DNA-binding transcriptional regulator -
  DMB38_RS14385 (DMB38_14385) - 3373439..3374188 (-) 750 WP_125935522.1 response regulator transcription factor -
  DMB38_RS14390 (DMB38_14390) - 3374349..3375407 (+) 1059 WP_125935523.1 alpha/beta fold hydrolase -
  DMB38_RS14395 (DMB38_14395) rcrQ 3375404..3377242 (-) 1839 WP_125935524.1 ABC transporter ATP-binding protein Regulator
  DMB38_RS14400 (DMB38_14400) rcrP 3377343..3379088 (-) 1746 WP_125935525.1 ABC transporter ATP-binding protein Regulator
  DMB38_RS14405 (DMB38_14405) - 3379186..3379443 (+) 258 WP_125935526.1 MoaD/ThiS family protein -
  DMB38_RS14410 (DMB38_14410) - 3379451..3381307 (+) 1857 WP_125935527.1 hypothetical protein -
  DMB38_RS14415 (DMB38_14415) - 3381405..3382133 (+) 729 WP_125935528.1 DUF2993 domain-containing protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 65949.57 Da        Isoelectric Point: 5.1057

>NTDB_id=255118 DMB38_RS14395 WP_125935524.1 3375404..3377242(-) (rcrQ) [Streptomyces sp. WAC 06738]
MRMFSGPPVERSLDFRGSAVRLLRTLRPDRTLIRVILVLGAAAVALTVAGPKLLGHATDLVVAGVYGNRVDTGSARASDG
IDFDAVGRTLLWAALVYAAAWGLGLAQARLTAVVVQRAVFRLREEVEAKLSRLPLSYFDRHQRGEILSRTTNDIDNVGQS
LQQTMSQIVTSLLTIAGVLAVMFWISPLLALVALVTVPLSITVATRVGKRAQPQFVAQWASTGKLNAHIEEMYTGHSLVQ
VFGRREEAAETFRKENDELFRAGYRAQFISGLIQPAMMCIGNLNYVLVAVVGGLRVASGALSIGDVQAFVQYSRQFSQPL
GQIASMANLVQSGVASAERVFELLDADEQEPDAATPARPAEPVRGEVAFEGVSFSYDPEKPLIEELSLTVRPGQTVAIVG
PTGAGKTTLVNLLMRFYEVAGGRILLDGVDVAEMSREELRAQIGMVLQDTWLFGGTIAENIAYGAPAGTPHEKIVAAAKA
THVDRFVRTLPDGYDTVIDEEGTGVSAGEKQLVTIARAFLAEPAILVLDEATSSVDTRTEVLIQHAMAELRTGRTSFVIA
HRLSTIRDADVILVMESGTIVEQGTHEDLLAAEGAYARLYQAQFAEPATETI

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=255118 DMB38_RS14395 WP_125935524.1 3375404..3377242(-) (rcrQ) [Streptomyces sp. WAC 06738]
ATGCGCATGTTCAGCGGCCCGCCCGTCGAGCGCTCCCTCGACTTCCGCGGCTCCGCCGTCCGCCTCCTGCGCACCCTGCG
CCCCGACCGCACGCTGATCCGCGTCATCCTCGTCCTCGGCGCCGCCGCGGTCGCGCTCACCGTCGCGGGACCGAAGCTCC
TCGGCCACGCCACCGACCTCGTCGTCGCCGGCGTCTACGGCAACCGCGTCGACACCGGCTCCGCCCGCGCCAGCGACGGC
ATCGACTTCGACGCGGTCGGCCGGACGCTGCTGTGGGCGGCCCTGGTGTACGCCGCCGCGTGGGGCCTCGGGCTCGCGCA
GGCGCGGCTGACGGCCGTGGTCGTGCAGCGGGCGGTCTTCCGGCTGCGCGAGGAGGTGGAGGCGAAGCTGTCGCGGCTTC
CGCTGTCGTACTTCGACCGCCACCAGCGGGGCGAGATCCTCTCCCGTACGACCAACGACATCGACAACGTCGGGCAGTCG
CTGCAGCAGACCATGAGCCAGATCGTGACGTCGCTGCTGACGATCGCCGGGGTGCTGGCGGTGATGTTCTGGATCTCGCC
GCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGATCACGGTGGCGACGCGGGTCGGCAAGCGGGCGCAGCCGC
AGTTCGTGGCGCAGTGGGCGTCCACGGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCACTCGCTGGTGCAG
GTCTTCGGTCGCCGGGAGGAGGCGGCGGAGACGTTCCGGAAGGAGAACGACGAGCTCTTCCGGGCGGGCTACCGGGCGCA
GTTCATCTCCGGGCTCATCCAGCCGGCGATGATGTGCATAGGCAACCTCAACTACGTCCTCGTCGCCGTCGTCGGCGGCC
TGCGGGTCGCCTCGGGGGCGCTGTCGATCGGCGACGTGCAGGCGTTCGTGCAGTACTCGCGGCAGTTCAGCCAGCCGCTG
GGGCAGATCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCGGAGCGGGTCTTCGAGCTGCTGGACGCGGA
CGAGCAGGAGCCGGACGCCGCCACCCCGGCCCGCCCGGCGGAGCCGGTGCGGGGGGAGGTGGCGTTCGAGGGCGTCTCCT
TCTCGTACGACCCGGAGAAACCGCTGATCGAGGAGCTGTCGCTGACGGTCCGCCCGGGCCAGACGGTGGCGATCGTCGGT
CCGACGGGGGCGGGGAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGGCCGGGGGCCGGATCCTGCTCGA
CGGCGTGGACGTGGCGGAGATGAGCCGCGAGGAGCTGCGGGCGCAGATCGGGATGGTGCTCCAGGACACGTGGCTGTTCG
GCGGCACGATCGCGGAGAACATCGCCTACGGGGCACCGGCGGGCACACCGCACGAGAAGATCGTCGCCGCCGCGAAGGCC
ACCCACGTGGACCGCTTCGTCCGCACCCTCCCGGACGGCTACGACACGGTGATCGACGAGGAGGGCACGGGCGTCTCGGC
GGGCGAGAAGCAGCTCGTCACCATCGCCCGCGCGTTCCTCGCGGAACCGGCGATCCTGGTCCTGGACGAGGCGACGAGCT
CGGTGGACACCCGCACGGAGGTCCTGATCCAGCACGCGATGGCGGAACTCCGCACGGGCCGCACGAGCTTCGTGATCGCA
CACCGCCTCTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGTCGGGCACGATCGTGGAACAGGGCACACACGA
GGACCTCCTGGCAGCGGAAGGCGCCTACGCCCGCCTGTACCAGGCCCAGTTCGCGGAACCGGCAACAGAAACGATCTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(384-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.857

94.935

0.407