Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   DMB38_RS10270 Genome accession   NZ_CP029618
Coordinates   2455629..2457845 (-) Length   738 a.a.
NCBI ID   WP_125934911.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2450629..2462845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS10255 (DMB38_10265) - 2452798..2453466 (+) 669 WP_125934908.1 TetR/AcrR family transcriptional regulator -
  DMB38_RS10260 (DMB38_10270) - 2453563..2453790 (+) 228 WP_125934909.1 cation transporter -
  DMB38_RS10265 (DMB38_10275) - 2454170..2455459 (-) 1290 WP_125934910.1 citrate synthase -
  DMB38_RS10270 (DMB38_10280) recD/recD2/recDB 2455629..2457845 (-) 2217 WP_125934911.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DMB38_RS10275 (DMB38_10285) - 2458128..2458724 (+) 597 WP_125934912.1 DUF937 domain-containing protein -
  DMB38_RS10280 (DMB38_10290) - 2458835..2459686 (-) 852 WP_125934913.1 sugar phosphate isomerase/epimerase family protein -
  DMB38_RS10285 (DMB38_10295) - 2459683..2460858 (-) 1176 WP_125934914.1 dihydrodipicolinate synthase family protein -
  DMB38_RS10290 (DMB38_10300) - 2460855..2462024 (-) 1170 WP_125934915.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79576.04 Da        Isoelectric Point: 6.8898

>NTDB_id=255111 DMB38_RS10270 WP_125934911.1 2455629..2457845(-) (recD/recD2/recDB) [Streptomyces sp. WAC 06738]
MTQLAVVEGVLERITYANEDNGYTVARVDTGRGGGDLLTVVGALLGAQPGESLRMEGRWGSHPQYGKQFTVENYRTVLPA
TVQGIRRYLGSGLIKGIGPRIAERIVDHFGVDTLDVIEEDPARLVEVPGLGPKRTKLIGAAWEEQKAIKEVMLFLQGVGV
STSIAVRIYKSYGDASISVVKNEPYRLAADVWGIGFLTADRIARSVGIPHDSPERVKAGLQYALSQSSDQGNCFLPEQQL
ITEAVKLLQVDTGLVIDCLDELVKEEGVVRETVPGPAGQEAVQGIYLVPFHRAEVSLAAQLLRLLRTERDRMPAFQDVDW
DRALSWLGGRTGAELAPEQEQAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVMAAPTGRAAKRLAELTGAE
ASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLAKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLAEG
GPVPAVRLTRIFRQARQSGVVTNAHRINSGVQPLTQGLADFFLFAEDDTEAAGRLTVDVAARRIPAKFGLDPRRDVQVLA
PMHRGPAGAGALNGLLQEAVTPGRPGLPEKRFGGRTFRVGDKVTQIRNNYEKGSNGVFNGTVGVVTALDADEQRLTVLTD
EDEEVPYDFDELDELTHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKALGQAVRTVSA
GRRCTALDHRLRGRVGLP

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=255111 DMB38_RS10270 WP_125934911.1 2455629..2457845(-) (recD/recD2/recDB) [Streptomyces sp. WAC 06738]
ATGACGCAACTGGCGGTGGTGGAGGGGGTCCTCGAGCGGATCACGTACGCCAACGAGGACAACGGGTACACGGTCGCCCG
CGTCGACACCGGCCGCGGCGGCGGCGATCTCCTCACGGTCGTCGGCGCCCTCCTCGGCGCCCAGCCCGGCGAGTCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAACAGTTCACCGTGGAGAACTACCGAACGGTCCTCCCCGCC
ACCGTCCAGGGCATCCGCCGGTATCTCGGCTCGGGGCTGATCAAGGGCATCGGGCCCCGCATCGCCGAGCGCATCGTCGA
CCACTTCGGCGTCGACACCCTCGACGTCATCGAGGAGGATCCCGCCCGGCTCGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GGACGAAGCTGATCGGCGCCGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGCTCTTCCTCCAGGGCGTCGGCGTC
TCCACGTCCATCGCCGTGCGGATCTACAAGTCGTACGGGGACGCCTCCATCTCCGTGGTGAAGAACGAGCCGTACCGGCT
GGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGGATCGCCCGCTCCGTCGGCATCCCGCACGACAGCCCGG
AGCGGGTGAAGGCCGGCCTTCAGTACGCGCTGTCGCAGTCCTCCGACCAGGGCAACTGCTTCCTGCCCGAGCAGCAGCTC
ATCACCGAGGCGGTCAAGCTGCTCCAGGTCGACACGGGCCTGGTCATCGACTGCCTGGACGAGCTGGTGAAGGAGGAGGG
CGTCGTCCGGGAGACGGTGCCCGGGCCGGCCGGTCAGGAGGCCGTGCAGGGGATCTACCTCGTGCCGTTCCACCGCGCGG
AGGTCTCCCTGGCGGCCCAGTTGCTGCGCCTGCTGCGCACCGAGCGGGACCGGATGCCCGCCTTCCAGGATGTCGACTGG
GACCGGGCGCTGAGCTGGCTCGGCGGTCGCACCGGCGCGGAGCTGGCGCCCGAGCAGGAGCAGGCGGTCCGGCTGGCGCT
GACGGAGAAGGTCGCCGTGCTCACCGGTGGCCCGGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAGCTGGCCC
GGGCCAAGCGGGCGAAGGTGGTGATGGCGGCGCCCACGGGCCGCGCGGCCAAGCGGCTGGCGGAGCTCACCGGCGCCGAG
GCGTCCACGGTCCACCGGCTGCTGGAGCTGAAGCCGGGCGGCGACGCCGCGTACGACAGGGACCGCCCGCTCGACGCCGA
CCTGGTCGTCGTCGACGAAGCCTCGATGCTCGACCTGCTGCTGGCGAACAAGCTGGCCAAGGCGGTGCCGCCGGGGGCGC
ACCTGCTGCTCGTCGGCGACGTCGACCAACTGCCGTCCGTCGGCGCCGGGGAGGTGCTGCGCGACCTGCTGGCCGAGGGC
GGTCCGGTGCCCGCGGTCCGGCTGACCCGGATCTTCCGCCAGGCCCGGCAGTCCGGCGTGGTGACGAACGCGCACCGCAT
CAACTCCGGGGTCCAGCCCCTCACCCAGGGCCTCGCCGACTTCTTCCTCTTCGCCGAGGACGACACGGAGGCCGCCGGCC
GGCTGACGGTGGATGTGGCGGCGCGTCGGATTCCGGCCAAATTCGGCCTCGACCCGCGCCGCGATGTGCAGGTCCTCGCC
CCCATGCACCGTGGCCCCGCGGGCGCCGGCGCGCTCAACGGGCTGCTCCAGGAGGCCGTCACCCCGGGCCGCCCCGGGTT
GCCGGAGAAGCGCTTCGGCGGCCGTACGTTCCGCGTCGGCGACAAGGTCACGCAGATACGGAACAACTACGAGAAGGGGA
GCAACGGGGTCTTCAACGGCACCGTCGGCGTCGTCACCGCCCTGGATGCCGACGAGCAGCGGCTGACGGTGCTCACGGAC
GAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAGCTGACGCACGCGTACGCCGTCACCATCCACCGTTCGCA
GGGCAGCGAGTATCCGGCGGTGGTGATCCCCGTCACCACCGGCGCCTGGATGATGCTCCAACGGAACCTGCTGTACACGG
CCGTCACCCGGGCCAAGAAGCTGGTCGTGCTGGTCGGCTCCCGCAAGGCCCTCGGCCAGGCGGTGCGGACCGTTTCCGCA
GGCCGGCGTTGCACGGCGCTGGATCATCGGCTGCGTGGGCGAGTGGGTCTCCCATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

AAA domain (AAA_30)

(334-513)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-637)

Helix-hairpin-helix domain (HHH_5)

(94-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.456

100

0.36