Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DL538_RS06565 Genome accession   NZ_CP029609
Coordinates   1239736..1240653 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234736..1245653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS06550 (DL538_06540) trpS 1235315..1236307 (-) 993 WP_038430004.1 tryptophan--tRNA ligase -
  DL538_RS06555 (DL538_06545) oppA 1237052..1238689 (+) 1638 WP_131227310.1 oligopeptide ABC transporter substrate-binding protein OppA -
  DL538_RS06560 (DL538_06550) oppB 1238797..1239732 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  DL538_RS06565 (DL538_06555) amiD 1239736..1240653 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  DL538_RS06570 (DL538_06560) oppD 1240658..1241734 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  DL538_RS06575 (DL538_06565) oppF 1241736..1242653 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  DL538_RS06580 (DL538_06570) yjbB 1242759..1243976 (+) 1218 WP_131227311.1 MFS transporter -
  DL538_RS06585 (DL538_06575) yjbC 1244139..1244717 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  DL538_RS06590 (DL538_06580) spx 1244898..1245293 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=254906 DL538_RS06565 WP_003232954.1 1239736..1240653(+) (amiD) [Bacillus subtilis subsp. subtilis strain G7]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=254906 DL538_RS06565 WP_003232954.1 1239736..1240653(+) (amiD) [Bacillus subtilis subsp. subtilis strain G7]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAATATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTTTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364