Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   CTT40_RS31115 Genome accession   NZ_CP029605
Coordinates   6444352..6444876 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 24Pae112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6439352..6449876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTT40_RS31100 (CTT40_06061) aroB 6440468..6441574 (-) 1107 WP_003095831.1 3-dehydroquinate synthase -
  CTT40_RS31105 (CTT40_06062) aroK 6441624..6442142 (-) 519 WP_003095833.1 shikimate kinase AroK -
  CTT40_RS31110 (CTT40_06063) pilQ 6442154..6444298 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  CTT40_RS31115 (CTT40_06064) comL/pilP 6444352..6444876 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  CTT40_RS31120 (CTT40_06065) pilO 6444873..6445496 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  CTT40_RS31125 (CTT40_06066) pilN 6445493..6446089 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  CTT40_RS31130 (CTT40_06067) pilM 6446089..6447153 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  CTT40_RS31135 (CTT40_06068) - 6447338..6449809 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=254838 CTT40_RS31115 WP_003095836.1 6444352..6444876(-) (comL/pilP) [Pseudomonas aeruginosa strain 24Pae112]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=254838 CTT40_RS31115 WP_003095836.1 6444352..6444876(-) (comL/pilP) [Pseudomonas aeruginosa strain 24Pae112]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362