Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CSW12_RS08635 Genome accession   NZ_CP024655
Coordinates   1623980..1624759 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain MLY1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1618980..1629759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW12_RS08615 (CSW12_08640) trmFO 1619634..1620938 (+) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CSW12_RS08620 (CSW12_08645) xerC 1621004..1621903 (+) 900 WP_001101245.1 tyrosine recombinase XerC -
  CSW12_RS08625 (CSW12_08650) hslV 1621946..1622488 (+) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  CSW12_RS08630 (CSW12_08655) hslU 1622511..1623902 (+) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  CSW12_RS08635 (CSW12_08660) codY 1623980..1624759 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CSW12_RS08640 (CSW12_08665) rpsB 1625108..1625809 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  CSW12_RS08645 (CSW12_08670) tsf 1625913..1626800 (+) 888 WP_001018577.1 translation elongation factor Ts -
  CSW12_RS08650 (CSW12_08675) pyrH 1626867..1627589 (+) 723 WP_000042669.1 UMP kinase -
  CSW12_RS08655 (CSW12_08680) frr 1627592..1628149 (+) 558 WP_000531505.1 ribosome recycling factor -
  CSW12_RS08660 (CSW12_08685) uppS 1628235..1629011 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=254821 CSW12_RS08635 WP_000421290.1 1623980..1624759(+) (codY) [Bacillus cereus strain MLY1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=254821 CSW12_RS08635 WP_000421290.1 1623980..1624759(+) (codY) [Bacillus cereus strain MLY1]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACTTTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment