Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DLM49_RS25515 Genome accession   NZ_CP029601
Coordinates   5729935..5731863 (-) Length   642 a.a.
NCBI ID   WP_125506637.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01438     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5724935..5736863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM49_RS25495 (DLM49_25555) - 5725359..5726633 (-) 1275 WP_125506633.1 deoxyguanosinetriphosphate triphosphohydrolase -
  DLM49_RS25500 (DLM49_25560) - 5727237..5727950 (+) 714 WP_125506634.1 SDR family NAD(P)-dependent oxidoreductase -
  DLM49_RS25505 (DLM49_25565) - 5728016..5728867 (+) 852 WP_125506635.1 NAD(P)H-binding protein -
  DLM49_RS25510 (DLM49_25570) - 5728887..5729768 (-) 882 WP_125506636.1 helix-turn-helix domain-containing protein -
  DLM49_RS25515 (DLM49_25575) rcrQ 5729935..5731863 (-) 1929 WP_125506637.1 ABC transporter ATP-binding protein Regulator
  DLM49_RS25520 (DLM49_25580) rcrP 5731863..5733596 (-) 1734 WP_125506638.1 ABC transporter ATP-binding protein Regulator
  DLM49_RS25525 (DLM49_25585) - 5733768..5735222 (-) 1455 WP_125506639.1 FGGY family carbohydrate kinase -
  DLM49_RS25530 (DLM49_25590) - 5735286..5735591 (-) 306 WP_125506640.1 YtxH domain-containing protein -
  DLM49_RS36810 - 5736260..5736409 (-) 150 WP_164555725.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69591.82 Da        Isoelectric Point: 4.9667

>NTDB_id=254736 DLM49_RS25515 WP_125506637.1 5729935..5731863(-) (rcrQ) [Streptomyces sp. WAC 01438]
MAGPGGRMMAGGGPDQRSIDFKGSSKRLIARFRPERLTIGALLACVVVSVGLSVIGPKILGAATDLVFDGIVGRDMPEGA
TREEVLESMRERGEGDVADMLRGTDFTPGEGIDFTAVGQVLLGALAVFLAAGLLMAVATRLVNRAVNLTMFRMREDVQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVAQWRTTGRLNAHIEEMYTGHTLVKVFGRQEESAKRFAEENEALYEAGFKAQFNSGIMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADVSPAERPEALRGRVALE
HVSFRYDPDKPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSREELRSGIGMVLQDT
WLFGGTIAENIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKGMAQLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHDKLLAADGAYARLYKAQFAEAVAE
VE

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=254736 DLM49_RS25515 WP_125506637.1 5729935..5731863(-) (rcrQ) [Streptomyces sp. WAC 01438]
ATGGCGGGGCCCGGAGGACGGATGATGGCCGGCGGCGGCCCCGACCAGCGGTCGATCGACTTCAAGGGGTCGAGCAAACG
GCTGATCGCCCGGTTCCGCCCGGAACGCCTGACGATCGGCGCGCTGCTGGCCTGTGTCGTGGTGAGCGTGGGCCTGAGCG
TGATCGGGCCGAAGATCCTCGGCGCGGCCACCGACCTGGTGTTCGACGGGATCGTGGGCCGGGACATGCCGGAGGGCGCC
ACCCGGGAAGAGGTCCTGGAGTCGATGCGCGAGCGGGGCGAGGGCGATGTCGCCGACATGCTCCGCGGCACCGACTTCAC
CCCCGGTGAGGGCATCGACTTCACGGCGGTGGGGCAGGTCCTGCTGGGGGCGCTGGCGGTGTTCCTGGCGGCCGGTCTGC
TGATGGCGGTGGCGACCCGGCTGGTGAACCGGGCCGTGAACCTGACGATGTTCCGGATGCGCGAGGACGTGCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGTGTGCTCGCGATGATGT
TCTACGTCTCGTGGATCCTGGCGCTGGTGGCACTGGTGACGGTGCCGCTGTCGTTCGTCGTGGCCACGCGCGTGGGCAAG
CGGTCCCAGCCGCACTTCGTGGCGCAGTGGCGTACCACCGGCCGGCTCAACGCACACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCGGTTCGCCGAGGAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTATGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTGGCGTCGGGGTCGCTGTCCATCGGGGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACCCAGGTCGCGTCGATGGCCAACCTGGTGCAGTCGGGGGTCGCCTCCGCCGAGCGGATCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGGCGGACGTCTCGCCCGCCGAGCGGCCCGAGGCGCTGCGCGGGCGGGTGGCGCTGGAG
CACGTGTCGTTCCGGTACGACCCCGACAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGGAACCGGGCCGGACGGTCGC
GATCGTCGGACCGACGGGAGCCGGCAAGACCACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGGCGCA
TCACCCTCGACGGGGTCGACATCGCGCGGATGTCCCGGGAGGAACTGCGCTCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCCTACGGCGCGTCCCGTGAGGTCACCCGGGAGGAGATCGAGGAGGC
GGCGCGCGCCGCGCACGCGGACCGGTTCATCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGGGCCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACGATCGCTCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGCTCGGTGGACACGCGCACGGAGGTGCTGATCCAGAAGGGGATGGCACAACTGGCGCACGGCCGTACGTCGTT
CGTCATCGCCCACCGGCTGTCGACGATCCGGGACGCGGACACCATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGG
GCGCCCACGACAAGCTCCTGGCCGCGGACGGCGCCTACGCCCGCCTGTACAAGGCCCAGTTCGCGGAGGCGGTGGCGGAG
GTCGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.675

96.885

0.394

Multiple sequence alignment