Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS387_RS08755 Genome accession   NZ_CP024601
Coordinates   1902192..1902932 (+) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain KCOM 2799     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1897192..1907932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS387_RS08735 (CS387_08685) aspS 1897634..1899397 (-) 1764 WP_077082536.1 aspartate--tRNA ligase -
  CS387_RS12620 - 1899583..1899786 (-) 204 WP_157765945.1 DUF1661 domain-containing protein -
  CS387_RS08740 (CS387_08690) ribD 1899828..1900820 (-) 993 WP_099896269.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS387_RS08745 (CS387_08695) prmC 1900845..1901726 (+) 882 WP_099896271.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS387_RS08750 (CS387_08700) - 1901723..1902208 (+) 486 WP_021662028.1 regulatory protein RecX -
  CS387_RS08755 (CS387_08705) comF 1902192..1902932 (+) 741 WP_005875257.1 ComF family protein Machinery gene
  CS387_RS08760 (CS387_08710) - 1903062..1905131 (-) 2070 WP_054191318.1 M13 family metallopeptidase -
  CS387_RS08765 (CS387_08715) - 1905150..1906052 (-) 903 WP_077491643.1 nucleotidyltransferase -
  CS387_RS12245 - 1906234..1906374 (-) 141 WP_021663364.1 hypothetical protein -
  CS387_RS08770 (CS387_08720) - 1906472..1907053 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=254184 CS387_RS08755 WP_005875257.1 1902192..1902932(+) (comF) [Porphyromonas gingivalis strain KCOM 2799]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254184 CS387_RS08755 WP_005875257.1 1902192..1902932(+) (comF) [Porphyromonas gingivalis strain KCOM 2799]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAACGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment