Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS543_RS10985 Genome accession   NZ_CP024600
Coordinates   2397170..2397910 (-) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain KCOM 2801     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2392170..2402910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS543_RS10970 (CS543_10915) - 2393049..2393630 (+) 582 WP_004583806.1 RNA polymerase sigma factor -
  CS543_RS11950 - 2393728..2393868 (+) 141 WP_021663364.1 hypothetical protein -
  CS543_RS10975 (CS543_10920) - 2394050..2394952 (+) 903 WP_099809544.1 nucleotidyltransferase -
  CS543_RS10980 (CS543_10925) - 2394971..2397040 (+) 2070 WP_099809545.1 M13 family metallopeptidase -
  CS543_RS10985 (CS543_10930) comF 2397170..2397910 (-) 741 WP_005875257.1 ComF family protein Machinery gene
  CS543_RS10990 (CS543_10935) - 2397894..2398379 (-) 486 WP_099809546.1 regulatory protein RecX -
  CS543_RS10995 (CS543_10940) prmC 2398376..2399257 (-) 882 WP_004583800.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS543_RS11000 (CS543_10945) ribD 2399282..2400274 (+) 993 WP_099809547.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS543_RS12775 - 2400358..2400519 (+) 162 WP_394798070.1 DUF1661 domain-containing protein -
  CS543_RS11005 (CS543_10950) aspS 2400705..2402846 (+) 2142 WP_099809548.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=254178 CS543_RS10985 WP_005875257.1 2397170..2397910(-) (comF) [Porphyromonas gingivalis strain KCOM 2801]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254178 CS543_RS10985 WP_005875257.1 2397170..2397910(-) (comF) [Porphyromonas gingivalis strain KCOM 2801]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCAAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAACGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment